Table 1.

Summary of RNA-seq data.

Sample	Raw Reads	Clean Reads	Clean Bases	Error Rate (%)	Q20 (%)	Q30 (%)	GC Content (%)
De_1	51305060	49151244	7.37G	0.02	98.06	94.21	42.66
De_2	49674828	47359662	7.1G	0.02	98.21	94.57	42.83
De_3	58613332	56616148	8.49G	0.02	98.12	94.38	42.27
StABI5_1	58077052	56123334	8.42G	0.02	98.15	94.38	42.76
StABI5_2	68409014	66871468	10.03G	0.03	98.00	93.97	42.77
StABI5_3	67555414	65226846	9.78G	0.03	98.01	94.06	42.83
De_2Dk_1	54602684	52122618	7.82G	0.02	98.16	94.47	42.12
De_2Dk_2	60997616	56806266	8.52G	0.03	97.98	94.03	42.15
De_2Dk_3	51539718	49560170	7.43G	0.03	97.82	93.62	42.20
StABI5_2DK_1	56909932	54989466	8.25G	0.03	97.9	93.79	42.17
StABI5_2DK_2	66680642	64385132	9.66G	0.03	98.04	94.1	42.16
StABI5_2DK_3	76207430	74339060	11.15G	0.03	97.83	93.67	42.48

De: Desiree; StABI5: StABI5-OE-25; De_2Dk: Desiree treated with continuous darkness for 2 days; StABI5_2DK: StABI5-OE-25 treated with continuous darkness for 2 days.