| ABA | Abscisic acid |
| ARF | AUXIN RESPONSE FACTOR |
| BB | Bacterial blight |
| CTK | Cytokinin |
| DAB | 3,3′-Diaminobenzidine |
| DE | Differentially expressed |
| dpi | days post inoculation |
| ET | ethylene |
| GA | gibberellin |
| GRF | GROWTH-REGULATING |
| HB | Homeobox |
| hpi | hours post infection |
| JA | Jasmonic acid |
| miRNAs | microRNAs |
| M. oryzae | Magnaporthe oryzae |
| NIL | Near-isogenic line |
| OE | Overexpressing |
| OsARF8 | LOC_Os04g57610 |
| OsAGO1a | LOC_Os02g45070 |
| OsAGO1b | LOC_Os04g47870 |
| OsDCL1 | LOC_Os03g02970 |
| OsGAMYB | LOC_Os01g59660 |
| OsLRR-RLK2 | LOC_Os12g10740 |
| OsMPK20-4 | LOC_Os01g47530 |
| OsNAC60 | LOC_Os12g41680 |
| OsPBZ1 | Oryza sativa pathogenesis-related protein 10a |
| OsPR1a | Pathogenesis-related protein 1a |
| OsPR1b | Pathogenesis-related protein 1b |
| OsWD40-174 | LOC_Os09g39420 |
| PC | Principle component |
| RDV | Rice dwarf virus |
| Rice | Oryza sativa L. |
| R. solani | Rhizoctonia solani |
| RSV | Rice stripe virus |
| SA | Salicylic acid |
| SPL | SQUAMOSA PROMOTER BINDING-LIKE FACTOR |
| TP309 | Taipei 309 |
| TPM | Transcripts per million |
| WT | Wild-type |
| Xoo | Xanthomonas oryzae pv. oryzae |