. 2020 Feb 4;21(3):1040. doi: 10.3390/ijms21031040

Table 3.

Additive and additive x environment interaction effects of QTLs associated with seed shape traits in two RIL populations.

RIL	Trait	QTL	Chr	Pos (cM)	Physical Range (bp)	Flanking Marker	Additive Effect		AE Effect				Ref
RIL	Trait	QTL	Chr	Pos (cM)	Physical Range (bp)	Flanking Marker	A	PVE (%)	AE1	AE2	AE3	PVE (%)	Ref
ZY	SL	qSL-4-2_ZY	4	39.22	19283057–19438579	Mark386837–Mark359625	0.18	22.47	NS	NS	NS	0	[3]
		qSL-6-1_ZY	6	65.93	18831802–19024597	Mark750099–Mark741078	0.09	6.04	NS	NS	NS	1.69	[32]
		qSL-9-2_ZY	9	82.03	39583668–39417035	Mark596882–Mark570229	0.08	3.89	NS	NS	NS	0	THIS STUDY
		qSL-13-3_ZY	13	78.75	31540635–31390215	Mark473668–Mark478524	0.08	4.65	−0.03 **	0.03 **	NS	0.82	[3]
		qSL-13-4_ZY	13	4.001	13278146–14133381	Mark471284–Mark486987	0.06	2.62	0.02 **	−0.01 *	−0.01 *	0.45	[3]
		qSL-14-2_ZY	14	12.14	47107927–47737451	Mark941949–Mark890565	−0.08	3.97	0.01 **	NS	−0.01 *	0.11	THIS STUDY
		qSL-15-1_ZY	15	30.54	7595034–8201285	Mark817834–Mark818425	0.07	2.89	NS	NS	NS	0.04	[3]
		qSL-17-2_ZY	17	54.6	13439080–13701008	Mark96769–Mark84717	0.06	2.61	NSN	NS	NS	0	[34]
	SW	qSW-1-2_ZY	1	67.22	17489394–20846299	Mark974988–Mark977669	0.03	1.69	NS	0.03 **	−0.04 **	2.78	THIS STUDY
		qSW-1-1_ZY	1	100.2	51095466–51296512	Mark1014325–Mark988734	0.14	29.35	NS	NS	NS	0	THIS STUDY
		qSW-4-1_ZY	4	64.09	48139232–48129734	Mark370122–Mark383650	0.08	9.23	NS	NS	NS	0.1	[3]
		qSW-4-3_ZY	4	13.9	3681724–5115633	Mark411964–Mark375360	0.13	25.78	NS	NS	−0.01 *	0.25	[3]
		qSW-6-1_ZY	6	23.63	6820998–6873235	Mark743934–Mark764418	0.07	6.39	NS	0.05 **	−0.05 **	4.15	[32]
		qSW-9-3_ZY	9	58.19	30576094–33868843	Mark584128–Mark577210	0.04	2.86	NS	NS	NS	0	THIS STUDY
		qSW-13-3_ZY	13	80.04	32094249–32215414	Mark487690–Mark477270	0.09	12.55	−0.01 *	0.03 **	−0.02 **	1.67	THIS STUDY
		qSW-17-3_ZY	17	26.12	5914087–5923952	Mark80080–Mark102449	0.07	6.28	0.03 **	NS	−0.02 **	1.4	[3]
		qSW-20-1_ZY	20	82.14	41039353–41758780	Mark244793–Mark230802	0.04	2.48	NS	NS	−0.01 *	0.16	THIS STUDY
	ST	qST-1-3_ZY	1	66.15	24564849–25434623	Mark988529–Mark966630	0.06	3.58	NS	NS	NS	0	THIS STUDY
		qST-4-2_ZY	4	44.13	30867521–32458924	Mark404804–Mark410274	0.06	3.43	0.01 **	NS	−0.02 **	0.47	[3]
		qST-6-4_ZY	6	28.98	8734791–8864415	Mark778253–Mark768262	0.09	7.87	NS	NS	NS	0	THIS STUDY
		qST-13-4_ZY	13	74.5	29909876–29933390	Mark492165–Mark480651	0.08	6.47	−0.04 **	0.02 **	0.01 **	1.31	[33]
		qST-17-3_ZY	17	26.12	5914087–5923952	Mark80080–Mark102449	0.08	5.27	NS	NS	NS	0.03	[3]
		qST-18-2_ZY	18	73.25	11452216–56974484	Mark107824–Mark1041506	0.14	17.36	NS	NS	NS	0	THIS STUDY
		qST-20-1_ZY	20	46.1	32964872–34278811	Mark222598–Mark260922	0.09	6.68	NS	NS	NS	0	[33]
	SLW	qSLW-6-3_ZY	6	68.61	39116570–39478973	Mark735467–Mark752696	0.02	16.59	NS	NS	NS	0.02	[33]
		qSLW-9-2_ZY	9	26.46	5253206–5593340	Mark586124–Mark605515	0.02	6.23	NS	NS	NS	0.01	THIS STUDY
		qSLW-10-1_ZY	10	34.22	40118012–41534124	Mark647482–Mark674118	−0.01	3.59	NS	NS	NS	0.22	THIS STUDY
		qSLW-14-1_ZY	14	2.62	46512262–46896487	Mark910347–Mark906347	−0.03	3.59	NS	NS	−0.01	0.22	THIS STUDY
	SLT	qSLT-2-2_ZY	2	54.96	13892893–14031565	Mark45679–Mark24395	−0.04	14.3	NS	NS	NS	0	THIS STUDY
		qSLT-6-5_ZY	6	72.26	43230405–43114475	Mark747633–Mark770074	0	7.18	NS	NS	NS	0	[34]
		qSLT-8-3_ZY	8	107.06	44543723–45326890	Mark457232–Mark423205	0.03	8.95	NS	NS	NS	0	THIS STUDY
		qSLT-10-1_ZY	10	34.22	40118012–41534124	Mark647482–Mark674118	−0.03	8.65	NS	NS	NS	0	THIS STUDY
		qSLT-10-2_ZY	10	3.31	4454862–4625724	Mark637694–Mark659817	0.03	9.56	NS	NS	NS	0	[34] -
		qSLT-14-2_ZY	14	118.74	27709972–27836278	Mark905511–Mark937850	−0.02	4.16	NS	NS	NS	0	THIS STUDY
		qSLT-17-1_ZY	17	12.06	3433165–1091815	Mark91398–Mark70303	−0.02	3.77	NS	NS	NS	0	[33]
		qSLT-18-1_ZY	18	72.71	11452216–56974484	Mark107824–Mark1041506	−0.04	3.77	NS	NS	NS	0	THIS STUDY
	SWT	qSWT-2-2_ZY	2	45.8	10992717–11277233	Mark4308–Mark33823	−0.04	3.72	NS	NS	NS	0	THIS STUDY
		qSWT-8-3_ZY	8	111.68	45326630–45114110	Mark466182–Mark457232	0.01	4.91	NS	NS	NS	0	THIS STUDY
		qSWT-13-3_ZY	13	118.22	39676002–42053780	Mark492087–Mark510247	−0.01	4.03	NS	NS	NS	0.36	[34]
		qSWT-14-1_ZY	14	132.78	43567951–44159326	Mark927308–Mark890844	−0.01	3.64	NS	NS	NS	0.01	THIS STUDY
		qSWT-18-1_ZY	18	73.25	56974254–11452436	Mark107824–Mark1041506	−0.03	18.77	NS	NS	NS	0.79	THIS STUDY
K3N	SL	qSL-17-3_K3N	17	118.01	40207655–41906774	bin1466–bin1467	0.08	5.71	NS	NS	NS	0	THIS STUDY
	SL	qSL-20-1_K3N	20	55.91	36184890–36777026	bin1698–bin1699	−0.09	6.72	NS	−0.01 *	0.03 **	1.02	THIS STUDY
	ST	qST-10-1_K3N	10	59.22	36682803–37647030	bin827–	−0.08	7.05	−0.03 **	0.02 **	0.02 **	2.06	THIS STUDY
	ST	qST-10-1_K3N	10	59.22	36682803–37647030	bin829	−0.08	7.05	−0.03 **	0.02 **	0.02 **	2.06	THIS STUDY
	SLW	qSLW-5-2_K3N	5	94.46	38132148–38801307	bin402–	−0.01	7.06	NS	NS	NS	0.01	[34]
		qSLW-5-2_K3N	5	94.46	38132148–38801307	bin403	−0.01	7.06	NS	NS	NS	0.01	[34]
		qSLW-16-1_K3N	16	69.6	32318950–33186025	bin1362–bin1363	−0.01	2.2	NS	NS	NS	0.02	[34]
	SLT	qSLT-16-1_K3N	16	75.68	33853674–35244129	bin1371–bin1372	−0.04	19.15	NS	−0.01 *	NS	1.49	THIS STUDY
	SLT	qSLT-20-1K3N	20	68.27	37878839–38300982	bin1704–bin1705	−0.03	11.77	NS	NS	NS	0.05	THIS STUDY

Chr.: chromosome. * p < 0.05 and ** p < 0.01. PVE indicates phenotypic variation expressed by additive effects. AE1: 2012FY, AE2: 2012JP, and AE3: 2017JP.