Table 1.
List of the GO Terms Enriched in the Expanded Protein Families Specific to Cinara cedri, Sipha flava, Aphis glycines, Diuraphis noxia, Myzus persicae, and Acyrthosiphon pisum.
| Term Category | Term | Term Level | Adj. P-Value | Term Name |
|---|---|---|---|---|
| Cinara cedri | ||||
| molecular_function | GO:0001227 | 1 | 3.56E-18 | Transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| molecular_function | GO:0003676 | 1 | 4.52E-14 | Nucleic acid binding |
| molecular_function | GO:0003677 | 1 | 8.29E-05 | DNA binding |
| molecular_function | GO:0003690 | 1 | 4.57E-13 | Double-stranded DNA binding |
| molecular_function | GO:0003715 | 1 | 5.02E-28 | Obsolete transcription termination factor activity |
| molecular_function | GO:0003723 | 1 | 3.25E-07 | RNA binding |
| molecular_function | GO:0003725 | 1 | 2.56E-07 | Double-stranded RNA binding |
| molecular_function | GO:0003964 | 1 | 9.54E-11 | RNA-directed DNA polymerase activity |
| molecular_function | GO:0003994 | 1 | 5.41E-04 | Aconitate hydratase activity |
| molecular_function | GO:0004190 | 1 | 2.57E-05 | Aspartic-type endopeptidase activity |
| molecular_function | GO:0004356 | 1 | 1.36E-04 | Glutamate-ammonia ligase activity |
| molecular_function | GO:0004497 | 1 | 3.44E-06 | Monooxygenase activity |
| molecular_function | GO:0004525 | 1 | 6.85E-06 | Ribonuclease III activity |
| molecular_function | GO:0004618 | 1 | 3.52E-04 | Phosphoglycerate kinase activity |
| molecular_function | GO:0004984 | 1 | 6.99E-06 | Olfactory receptor activity |
| molecular_function | GO:0005506 | 1 | 6.42E-13 | Iron ion binding |
| molecular_function | GO:0005549 | 1 | 1.04E-04 | Odorant binding |
| molecular_function | GO:0008521 | 1 | 3.14E-05 | Acetyl-CoA transporter activity |
| molecular_function | GO:0016705 | 1 | 1.08E-18 | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| molecular_function | GO:0018024 | 1 | 2.57E-05 | Histone-lysine N-methyltransferase activity |
| molecular_function | GO:0020037 | 1 | 3.00E-05 | Heme binding |
| molecular_function | GO:0031177 | 1 | 3.00E-04 | Phosphopantetheine binding |
| molecular_function | GO:0031490 | 1 | 8.29E-05 | Chromatin DNA binding |
| molecular_function | GO:0042302 | 1 | 2.70E-05 | Structural constituent of cuticle |
| cellular_component | GO:0000786 | 1 | 2.76E-10 | Nucleosome |
| cellular_component | GO:0030015 | 1 | 5.41E-04 | CCR4-NOT core complex |
| cellular_component | GO:0070877 | 1 | 8.29E-05 | Microprocessor complex |
| biological_process | GO:0006278 | 1 | 1.60E-09 | RNA-dependent DNA biosynthetic process |
| biological_process | GO:0006353 | 1 | 1.79E-26 | DNA-templated transcription, termination |
| biological_process | GO:0006807 | 1 | 7.05E-05 | Nitrogen compound metabolic process |
| biological_process | GO:0009452 | 1 | 8.38E-05 | 7-Methylguanosine RNA capping |
| biological_process | GO:0015074 | 1 | 4.11E-08 | DNA integration |
| biological_process | GO:0016075 | 1 | 1.86E-06 | rRNA catabolic process |
| Sipha flava | ||||
| molecular_function | GO:0000166 | 1 | 2.39E-08 | Nucleotide binding |
| molecular_function | GO:0001227 | 1 | 6.76E-23 | Transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| molecular_function | GO:0003676 | 1 | 2.44E-37 | Nucleic acid binding |
| molecular_function | GO:0003678 | 1 | 1.23E-44 | DNA helicase activity |
| molecular_function | GO:0003690 | 1 | 9.51E-18 | Double-stranded DNA binding |
| molecular_function | GO:0003696 | 1 | 2.71E-22 | Satellite DNA binding |
| molecular_function | GO:0003697 | 1 | 1.53E-11 | Single-stranded DNA binding |
| molecular_function | GO:0003715 | 1 | 1.72E-12 | Obsolete transcription termination factor activity |
| molecular_function | GO:0003723 | 1 | 6.15E-37 | RNA binding |
| molecular_function | GO:0003730 | 1 | 1.15E-19 | mRNA 3′-UTR binding |
| molecular_function | GO:0003887 | 1 | 1.15E-05 | DNA-directed DNA polymerase activity |
| molecular_function | GO:0004535 | 1 | 6.78E-04 | Poly(A)-specific ribonuclease activity |
| molecular_function | GO:0004601 | 1 | 1.99E-11 | Peroxidase activity |
| molecular_function | GO:0004666 | 1 | 8.59E-06 | Prostaglandin-endoperoxide synthase activity |
| molecular_function | GO:0004801 | 1 | 3.80E-04 | Sedoheptulose-7-phosphate: d-glyceraldehyde-3-phosphate glyceronetransferase activity |
| molecular_function | GO:0005200 | 1 | 1.10E-10 | Structural constituent of cytoskeleton |
| molecular_function | GO:0008168 | 1 | 1.26E-25 | Methyltransferase activity |
| molecular_function | GO:0008408 | 1 | 7.74E-04 | 3′–5′ Exonuclease activity |
| molecular_function | GO:0010521 | 1 | 8.42E-07 | Telomerase inhibitor activity |
| molecular_function | GO:0020037 | 1 | 1.05E-07 | Heme binding |
| molecular_function | GO:0032947 | 1 | 8.59E-06 | Protein complex scaffold activity |
| molecular_function | GO:0043141 | 1 | 2.72E-06 | ATP-dependent 5′–3′ DNA helicase activity |
| molecular_function | GO:0043169 | 1 | 5.84E-06 | Cation binding |
| cellular_component | GO:0000792 | 1 | 1.22E-20 | Heterochromatin |
| cellular_component | GO:0005657 | 1 | 3.02E-04 | Replication fork |
| cellular_component | GO:0005701 | 1 | 3.26E-23 | Polytene chromosome chromocenter |
| cellular_component | GO:0005811 | 1 | 8.41E-04 | Lipid droplet |
| cellular_component | GO:0005858 | 1 | 3.51E-04 | Axonemal dynein complex |
| cellular_component | GO:0005874 | 1 | 7.40E-07 | Microtubule |
| cellular_component | GO:0030014 | 1 | 7.64E-05 | CCR4-NOT complex |
| cellular_component | GO:0030015 | 1 | 1.47E-07 | CCR4-NOT core complex |
| cellular_component | GO:0030529 | 1 | 2.48E-14 | Intracellular ribonucleoprotein complex |
| biological_process | GO:0000002 | 1 | 3.02E-04 | Mitochondrial genome maintenance |
| biological_process | GO:0000288 | 1 | 8.59E-06 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay |
| biological_process | GO:0000289 | 1 | 1.41E-04 | Nuclear-transcribed mRNA poly(A) tail shortening |
| biological_process | GO:0000723 | 1 | 1.67E-50 | Telomere maintenance |
| biological_process | GO:0001510 | 1 | 4.54E-36 | RNA methylation |
| biological_process | GO:0005975 | 1 | 1.29E-05 | Carbohydrate metabolic process |
| biological_process | GO:0006260 | 1 | 7.46E-04 | DNA replication |
| biological_process | GO:0006281 | 1 | 2.55E-24 | DNA repair |
| biological_process | GO:0006353 | 1 | 4.95E-12 | DNA-templated transcription, termination |
| biological_process | GO:0006370 | 1 | 1.83E-05 | 7-Methylguanosine mRNA capping |
| biological_process | GO:0006954 | 1 | 3.78E-08 | Inflammatory response |
| biological_process | GO:0006979 | 1 | 2.18E-10 | Response to oxidative stress |
| biological_process | GO:0007017 | 1 | 1.85E-08 | Microtubule-based process |
| biological_process | GO:0007059 | 1 | 4.42E-13 | Chromosome segregation |
| biological_process | GO:0008217 | 1 | 8.59E-06 | Regulation of blood pressure |
| biological_process | GO:0009452 | 1 | 4.36E-45 | 7-Methylguanosine RNA capping |
| biological_process | GO:0016070 | 1 | 3.65E-13 | RNA metabolic process |
| biological_process | GO:0019371 | 1 | 8.59E-06 | Cyclooxygenase pathway |
| biological_process | GO:0030261 | 1 | 7.60E-17 | Chromosome condensation |
| biological_process | GO:0031507 | 1 | 3.26E-23 | Heterochromatin assembly |
| biological_process | GO:0032211 | 1 | 8.42E-07 | Negative regulation of telomere maintenance via telomerase |
| biological_process | GO:0032259 | 1 | 1.86E-04 | Methylation |
| biological_process | GO:0044806 | 1 | 8.42E-07 | G-quadruplex DNA unwinding |
| biological_process | GO:0045727 | 1 | 4.44E-20 | Positive regulation of translation |
| biological_process | GO:0051258 | 1 | 3.88E-05 | Protein polymerization |
| biological_process | GO:0051974 | 1 | 8.42E-07 | Negative regulation of telomerase activity |
| biological_process | GO:1901657 | 1 | 5.82E-05 | Glycosyl compound metabolic process |
| Aphis glycines | ||||
| molecular_function | GO:0001227 | 1 | 2.36E-04 | Transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| molecular_function | GO:0003676 | 1 | 3.08E-37 | Nucleic acid binding |
| molecular_function | GO:0003677 | 1 | 9.92E-05 | DNA binding |
| molecular_function | GO:0003715 | 1 | 4.51E-19 | Obsolete transcription termination factor activity |
| molecular_function | GO:0003887 | 1 | 1.12E-04 | DNA-directed DNA polymerase activity |
| molecular_function | GO:0004312 | 1 | 5.19E-08 | Fatty acid synthase activity |
| molecular_function | GO:0004553 | 1 | 8.62E-05 | Hydrolase activity, hydrolyzing O-glycosyl compounds |
| molecular_function | GO:0004866 | 1 | 5.12E-04 | Endopeptidase inhibitor activity |
| molecular_function | GO:0004869 | 1 | 1.04E-05 | Cysteine-type endopeptidase inhibitor activity |
| molecular_function | GO:0008408 | 1 | 5.21E-05 | 3′–5′ Exonuclease activity |
| molecular_function | GO:0008422 | 1 | 1.12E-04 | Beta-glucosidase activity |
| molecular_function | GO:0008521 | 1 | 5.75E-08 | Acetyl-CoA transporter activity |
| molecular_function | GO:0019789 | 1 | 1.11E-08 | SUMO transferase activity |
| molecular_function | GO:0031177 | 1 | 4.71E-05 | Phosphopantetheine binding |
| molecular_function | GO:0043027 | 1 | 1.55E-05 | Cysteine-type endopeptidase inhibitor activity involved in apoptotic process |
| molecular_function | GO:0043169 | 1 | 1.21E-07 | Cation binding |
| molecular_function | GO:0044390 | 1 | 5.12E-04 | Ubiquitin-like protein conjugating enzyme binding |
| molecular_function | GO:0061663 | 1 | 1.50E-04 | NEDD8 ligase activity |
| molecular_function | GO:0089720 | 1 | 1.55E-05 | Caspase binding |
| cellular_component | GO:0005652 | 1 | 2.75E-04 | Nuclear lamina |
| cellular_component | GO:0005705 | 1 | 4.07E-04 | Polytene chromosome interband |
| cellular_component | GO:0005876 | 1 | 1.91E-04 | Spindle microtubule |
| cellular_component | GO:0008537 | 1 | 1.55E-05 | Proteasome activator complex |
| cellular_component | GO:0035012 | 1 | 2.18E-05 | Polytene chromosome, telomeric region |
| cellular_component | GO:0070776 | 1 | 5.82E-08 | MOZ/MORF histone acetyltransferase complex |
| biological_process | GO:0001510 | 1 | 7.60E-13 | RNA methylation |
| biological_process | GO:0005975 | 1 | 1.18E-08 | Carbohydrate metabolic process |
| biological_process | GO:0006353 | 1 | 1.61E-18 | DNA-templated transcription, termination |
| biological_process | GO:0007289 | 1 | 5.12E-04 | Spermatid nucleus differentiation |
| biological_process | GO:0007446 | 1 | 3.21E-05 | Imaginal disc growth |
| biological_process | GO:0009452 | 1 | 6.31E-18 | 7-Methylguanosine RNA capping |
| biological_process | GO:0030261 | 1 | 9.74E-06 | Chromosome condensation |
| biological_process | GO:0043154 | 1 | 1.13E-04 | Negative regulation of cysteine-type endopeptidase activity involved in apoptotic process |
| biological_process | GO:0046425 | 1 | 6.74E-04 | Regulation of JAK-STAT cascade |
| biological_process | GO:0046426 | 1 | 4.76E-04 | Negative regulation of JAK-STAT cascade |
| biological_process | GO:0070936 | 1 | 4.71E-05 | Protein K48-linked ubiquitination |
| biological_process | GO:0090307 | 1 | 6.55E-04 | Mitotic spindle assembly |
| biological_process | GO:0097340 | 1 | 1.50E-04 | Inhibition of cysteine-type endopeptidase activity |
| biological_process | GO:1901657 | 1 | 2.18E-05 | Glycosyl compound metabolic process |
| biological_process | GO:1990001 | 1 | 2.82E-07 | Inhibition of cysteine-type endopeptidase activity involved in apoptotic process |
| biological_process | GO:2001271 | 1 | 1.50E-04 | Negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis |
| Diuraphis noxia | ||||
| molecular_function | GO:0003678 | 1 | 6.51E-05 | DNA helicase activity |
| molecular_function | GO:0004827 | 1 | 2.22E-05 | Proline-tRNA ligase activity |
| molecular_function | GO:0008424 | 1 | 1.34E-04 | Glycoprotein 6-alpha-l-fucosyltransferase activity |
| molecular_function | GO:0046921 | 1 | 6.24E-05 | Alpha-(1->6)-fucosyltransferase activity |
| biological_process | GO:0000723 | 1 | 5.82E-06 | Telomere maintenance |
| biological_process | GO:0006433 | 1 | 2.22E-05 | Prolyl-tRNA aminoacylation |
| biological_process | GO:0033578 | 1 | 1.34E-04 | Protein glycosylation in Golgi |
| biological_process | GO:0036071 | 1 | 1.34E-04 | N-glycan fucosylation |
| biological_process | GO:0046368 | 1 | 6.24E-05 | GDP-l-fucose metabolic process |
| Myzus persicae | ||||
| molecular_function | GO:0001227 | 1 | 1.86E-13 | Transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| molecular_function | GO:0003676 | 1 | 1.79E-25 | Nucleic acid binding |
| molecular_function | GO:0003677 | 1 | 2.30E-11 | DNA binding |
| molecular_function | GO:0003690 | 1 | 1.17E-09 | Double-stranded DNA binding |
| molecular_function | GO:0003777 | 1 | 5.98E-04 | Microtubule motor activity |
| molecular_function | GO:0004149 | 1 | 2.89E-04 | Dihydrolipoyllysine-residue succinyltransferase activity |
| molecular_function | GO:0004601 | 1 | 1.38E-04 | Peroxidase activity |
| molecular_function | GO:0004818 | 1 | 6.76E-05 | Glutamate-tRNA ligase activity |
| molecular_function | GO:0004827 | 1 | 1.36E-04 | Proline-tRNA ligase activity |
| molecular_function | GO:0020037 | 1 | 5.22E-06 | Heme binding |
| biological_process | GO:0006424 | 1 | 2.02E-05 | Glutamyl-tRNA aminoacylation |
| biological_process | GO:0006433 | 1 | 1.36E-04 | Prolyl-tRNA aminoacylation |
| biological_process | GO:0006596 | 1 | 3.16E-06 | Polyamine biosynthetic process |
| biological_process | GO:0016925 | 1 | 2.30E-07 | Protein sumoylation |
| Acyrthosiphon pisum | ||||
| molecular_function | GO:0003676 | 1 | 4.01E-14 | Nucleic acid binding |
| molecular_function | GO:0003678 | 1 | 2.18E-11 | DNA helicase activity |
| molecular_function | GO:0003715 | 1 | 4.88E-05 | Obsolete transcription termination factor activity |
| molecular_function | GO:0004177 | 1 | 8.98E-13 | Aminopeptidase activity |
| molecular_function | GO:0004252 | 1 | 3.43E-19 | Serine-type endopeptidase activity |
| molecular_function | GO:0004313 | 1 | 7.14E-05 | [acyl-carrier-protein] S-acetyltransferase activity |
| molecular_function | GO:0004317 | 1 | 7.14E-05 | 3-Hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity |
| molecular_function | GO:0004319 | 1 | 7.14E-05 | Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity |
| molecular_function | GO:0004320 | 1 | 7.14E-05 | Oleoyl-[acyl-carrier-protein] hydrolase activity |
| molecular_function | GO:0004601 | 1 | 5.92E-23 | Peroxidase activity |
| molecular_function | GO:0004748 | 1 | 7.45E-05 | Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor |
| molecular_function | GO:0004888 | 1 | 2.47E-05 | Transmembrane signaling receptor activity |
| molecular_function | GO:0005506 | 1 | 6.66E-07 | Iron ion binding |
| molecular_function | GO:0005549 | 1 | 4.97E-04 | Odorant binding |
| molecular_function | GO:0008234 | 1 | 9.62E-10 | Cysteine-type peptidase activity |
| molecular_function | GO:0008237 | 1 | 1.20E-10 | Metallopeptidase activity |
| molecular_function | GO:0016295 | 1 | 7.14E-05 | Myristoyl-[acyl-carrier-protein] hydrolase activity |
| molecular_function | GO:0016296 | 1 | 7.14E-05 | Palmitoyl-[acyl-carrier-protein] hydrolase activity |
| molecular_function | GO:0016705 | 1 | 1.03E-06 | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| molecular_function | GO:0020037 | 1 | 1.23E-23 | Heme binding |
| molecular_function | GO:0030170 | 1 | 8.55E-04 | Pyridoxal phosphate binding |
| molecular_function | GO:0043169 | 1 | 5.10E-04 | Cation binding |
| cellular_component | GO:0005581 | 1 | 1.03E-06 | Collagen trimer |
| cellular_component | GO:0035012 | 1 | 7.45E-05 | Polytene chromosome, telomeric region |
| cellular_component | GO:0042600 | 1 | 9.51E-11 | Chorion |
| biological_process | GO:0000723 | 1 | 2.18E-11 | Telomere maintenance |
| biological_process | GO:0005975 | 1 | 1.46E-06 | Carbohydrate metabolic process |
| biological_process | GO:0006260 | 1 | 4.02E-04 | DNA replication |
| biological_process | GO:0006353 | 1 | 2.29E-05 | DNA-templated transcription, termination |
| biological_process | GO:0006508 | 1 | 1.12E-33 | Proteolysis |
| biological_process | GO:0006857 | 1 | 1.00E-04 | Oligopeptide transport |
| biological_process | GO:0006979 | 1 | 1.27E-14 | Response to oxidative stress |
| biological_process | GO:0007166 | 1 | 1.04E-04 | Cell surface receptor signaling pathway |
| biological_process | GO:0009263 | 1 | 6.11E-04 | Deoxyribonucleotide biosynthetic process |
| biological_process | GO:0035194 | 1 | 6.11E-04 | Posttranscriptional gene silencing by RNA |