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. 2020 Jan 13;48(4):1748–1763. doi: 10.1093/nar/gkz1227

Table 2.

Colour schemes used for colouring the implicit solvation average structures

Sequence Colour Criterion
AA Red >2 non-canonical hydrogen bonds
AA Blue <2 non-canonical hydrogen bonds; <0 kcal/mol non-canonical stacking energy
AT Red >2 non-canonical hydrogen bonds
AT Blue <2 non-canonical hydrogen bonds
CC Green Loss of ≥1 canonical hydrogen bonds
CG Yellow Loss of 2 canonical hydrogen bonds, gain of 1 non-canonical hydrogen bonds, change in non-canonical stacking energy of ∼20 kcal/mol