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. 2019 Nov 22;219(1):e201904046. doi: 10.1083/jcb.201904046

Table 1. Probe sets for smRNA FISH.

Sequence (5′–3′)
Hsp70 for CHO Hsp70 MSH5 VARS LSM C6orf48 MS2 repeats
CAC​GCA​CGA​GTA​GGT​GGT​G GGG​AGT​CAC​TCT​CGA​AAG​AC CCA​CGA​GCC​TGC​AAA​AGG​A ACACCCCTGAGCACGACG GAG​CGC​AAG​CTG​GGT​AGA​G GAG​CCC​ACT​TCG​CAA​AAA​G CAT​GTT​TTC​TAG​AGT​CGA​CC
CTTCCGTGCTGGAACACG CAC​AGG​TTC​GCT​CTG​GAA​AG CGC​TAC​AGG​TGG​GAG​AAC​G CGCGGACGCAGGACGAGA CAA​GCG​CTG​ACG​GGC​AAA​G AAC​TCT​CAT​ACT​GCC​AAC​C ATA​CTG​CAG​ACA​TGG​GTG​AT
TGG​TCG​TTG​GCG​ATG​ATC​T AAC​GCC​GGA​AAC​TCA​ACA​CG CGC​CTT​TTC​AGT​AAC​CTG​A CCGGTCTCACGAGGAACA GCG​GGA​AGC​GAC​GCA​GAA​A CAC​TCA​ACA​GTC​GGG​CCA​T CCT​TAG​GAT​CTA​ATG​AAC​CC
GTC​GGT​GAA​GGC​CAC​GTA​G CGA​CAA​GAG​CTC​AGT​CCT​T TCA​CGC​GCT​TAT​CTT​CCT​C CTTTGTGACAGGGAGCGT CAG​GTC​TGG​GGA​AAC​CGA​A TGC​GCA​AAG​GCA​GCG​CAA​G TGA​TCC​TCA​TGT​TTT​CTA​GG
CGT​CGA​AAC​ACG​GTG​TTC​TG TGA​GAC​TGG​GGG​CTG​GAA​AC GAG​TCG​TGC​ACG​TCT​TAT​G TAGTTCCCTAAGATCGCC GGA​AGA​CAG​CAG​GGT​GCT​G CAA​CGG​TAG​TTC​ACC​CAA​C AGA​GTC​GAC​CTG​CAG​ACA​TG
CGA​ACT​TGC​GGC​CGA​TCA​G TGG​TCG​TTG​GCG​ATG​ATC​TC GAA​GGA​AGG​GGT​CTG​AGG​G AGTCGAGCGGGCAGAGAC CTT​TTG​ACG​TCA​CGG​TAC​C AGA​CAC​CAG​AAA​CTC​CAG​T ATG​GGT​GAT​CCT​CAT​GTT​TT
GAT​CTC​CTC​GGG​GTA​GAA​G TTC​GCG​TCA​AAC​ACG​GTG​TT TCA​TTC​CTG​TCA​CGC​GGA​G AATCCACCTCACAGCCAG GGT​ACA​AAG​GCC​AGA​TCC​C GAG​CTA​GGT​CAG​TTC​CAA​G AAT​GAA​CCC​GGG​AAT​ACT​GC
CAT​CTT​CGT​CAG​CAC​CAT​G TTG​TCT​CCG​TCG​TTG​ATC​AC ATT​GTG​GGA​AAC​TCC​ACG​C AGATGGTCAGACTGGGCC CTC​CTC​AAT​GAA​CCT​GAG​A TTG​TTT​TGA​GTC​AGC​AGG​G AGG​CAA​TTA​GGT​ACC​TTA​GG
TGA​TCA​CCG​CGT​TGG​TCA​C AGA​TCT​CCT​CGG​GGT​AGA​AT GGT​GAA​TTC​TCG​GGT​ATT​T CGCGTGTACGTACTGGAG ATA​TCC​CAT​TTG​TTC​TCA​G CCA​TTT​TGC​AAT​CAC​TCG​C
GAG​TCG​TTG​AAG​TAG​GCG​G ATC​TCC​TTC​ATC​TTG​GTC​AG TGG​AGA​GCT​GTG​GAC​ACA​G TCGGCGTCTGGTTGGATG TTT​TTT​CCC​TCA​TCA​TGG​A ATC​ATC​ACT​CCC​TTC​CTA​T
CGT​GGG​CTC​GTT​GAT​GAT​C CTG​CGA​GTC​GTT​GAA​GTA​GG TAC​TTC​TGC​TAC​AGG​GCT​G GGAGTGTGGAAGGCTCTC TCC​TCA​CTG​AAT​CTC​TCT​C CAC​TCA​AGA​GTT​ACC​TGG​G
CCA​GGT​CGA​AGA​TGA​GCA​C ATG​ATC​CGC​AGC​ACG​TTG​AG TGG​CGC​GCA​GAA​TGC​AAA​G AACTATCCACCATCGCGG AGG​TCT​AAC​TTT​TCC​GTC​T TCA​GAG​CGC​TGC​GGT​GAT​G
ATG​GAC​ACG​TCG​AAC​GTG​C TCA​GGA​TGG​ACA​CGT​CGA​AG ACG​ATT​CAC​AGA​GGA​GGC​C GGGGAGTTCCTGGGGAAG AAG​CTT​GCC​TGG​CAG​AGA​A AAA​TGC​TGG​ACC​GAG​GGG​G
GAA​GAT​GCC​GTC​GTC​GAT​C TCG​AAG​ATG​CCG​TCG​TCG​AT AAA​AGT​GAG​GGC​GGT​TCG​G TCTCAGAGGGGCAGTGTC AGA​AAA​TAT​CCC​ACC​CGC​A CCA​TGA​ACT​CGT​TGA​GCC​T
CAC​GAA​GTG​GCT​CAC​CAG​C CCC​TCA​AAC​AGG​GAG​TCG​AT CAT​GAG​CTT​GGA​GGC​TCT​G CTGTCAGGAGCCGAGGAC CCC​ACT​CCT​TTC​AAT​GAA​T TTA​CAA​CTC​CTA​ACG​GGG​A
TGG​ACG​ACA​GGG​TCC​TCT​T GGT​GAT​GGA​CGT​GTA​GAA​GT CTTGGGTTCGCTCCTAAG CTGAGGGTCTGACCAGGC CTG​TGC​TCT​CTC​AGT​CGA​C GGA​TAA​CAC​GGC​GAT​GAA​C
CCT​CGA​ACA​GGG​AGT​CGA​T TTC​GGA​ACA​GGT​CGG​AGC​AC CTGGGGAAGCCGGAGGAG AGACACCCGAGTCCCATA AAG​TCC​CAG​AGA​GAC​TCT​G CCT​AAT​ACT​CAC​CTT​TAC​T
CGC​CGT​GAT​GGA​CGT​GTA​GA AGG​ACC​AGG​TCG​TGA​ATC​TG TTC​TAC​TCC​CCT​CAG​AGA​C CTCACGGGAGCTCCTTCG AAG​GCT​GGA​GCC​CAA​ATT​A AGG​CAT​TCA​AAA​GGC​TCT​C
GGA​ACA​GGT​CCG​AGC​ACA​G TTG​AAG​AAG​TCC​TGC​AGC​AG CCA​TCA​ACT​CTC​CAT​TCA​A GGTCCTATGTTTGAGTAG CAT​CCC​TGA​CAG​TTC​TCA​A TTG​GGA​ACA​AAG​CTT​TCC​G
CTT​CTG​CAC​CTT​GGG​GAT​G TTG​ATG​CTC​TTG​TTC​AGG​TC CCA​ACC​CTC​TTT​TAT​TCT​A GAAGACTGCGGGATCGAG TAC​TGG​TAT​TGT​GAA​CCC​C ATG​CCC​ATG​AAC​GAA​AGC​T
GTT​GAA​GAA​GTC​CTG​CAG​C TGC​ACG​TTC​TCG​GAC​TTG​TC GAT​CTG​TCC​AGC​AAG​GAA​G AGGTCCGAACGAAGTGGA GGA​GTG​TCC​TTT​GAC​AGT​A ACT​CCT​ATT​TTG​CAG​TAG​A
GAT​GCT​CTT​GTT​GAG​GTC​G TTG​ATC​AGG​GCA​GTC​ATC​AC ATT​CCA​CAG​CAC​ACA​CAG​A GGGAGACGTAGAGGGTGG TGT​GGG​AAG​GAG​CAT​GGT​A GGA​CGT​TAG​AAA​GGG​AGG​A
CTG​CAC​GTT​CTC​AGA​CTT​G TCG​TAC​ACC​TGG​ATC​AGC​AC TAG​GCA​ATG​CCC​AAG​TAT​C CTGGGGAAGGCATCTGGG GGG​AGA​GAG​GGG​GAA​AAC​C AGG​GAA​GCT​CTT​CTG​GAA​A
TTG​ATG​AGC​GCC​GTC​ATC​A CAG​ATT​GTT​GTC​TTT​CGT​CA GTG​GAG​TCA​CTA​GTA​TCA​T TAGCGAGCGGCTATGAGG TAG​TTC​CAC​GAC​CAC​ATC​C CCA​ATT​AGG​GAG​ATC​TGG​A
GAG​TAG​GTG​GTG​AAG​GTC​T ATG​TCG​AAG​GTC​ACC​TCG​AT GCA​TCT​GGC​ATG​AAG​TGG​A GTGGCTGGAGACAGATGC GTA​CCT​ACC​TCA​GGT​CAT​T AGC​ATC​GGA​GAC​TCT​AGT​C
CGT​ACA​CCT​GGA​TCA​GCA​C TGA​CGT​TCA​GGA​TGC​CGT​TG GAG​AAG​CTT​GAG​GCT​CTC​G GTTGGACAAGGACAGCCG CCC​AAC​AGA​CTT​GTT​GGA​A GTT​CCC​TAA​ATG​AGT​CAG​A
GAT​GCC​GCT​GAG​CTC​GAA​G TCA​TGT​TGA​AGG​CGT​AGG​AC GGA​ATT​CAT​GGT​TCC​ATC​C CGTGTCGGCGTAACTGAC TGC​TTT​GTA​TTG​TTT​TCC​A CTT​CTG​GAG​ACC​CAA​GTA​T
ATC​GAT​GTC​GAA​GGT​CAC​C TGT​CCA​GAA​CCT​TCT​TCT​TG CAT​CTG​CAA​TCC​CAG​AGA​G CACAGGCAGCTGGTATTA AAAGAGGTTCCAGGGCCC TGG​GCT​TCC​AGA​GTT​CAT​T
TGA​CGT​TCA​GGA​TGC​CGT​T CAC​GAG​ATG​ACC​TCT​TGA​CA CGAGCTTCGGAGTCCCAG GTACATCTTCCACCTCGC CTC​TGT​GAA​GGT​GCA​TTG​T
TAG​GAC​TCG​AGC​GCG​TTC​T TTG​TGC​TCA​AAC​TCG​TCC​TT AGG​CAC​AAG​GCA​TTT​ATT​T CCT​TCA​CTC​AGA​TTA​GTG​C
GCG​CTC​TTC​ATG​TTG​AAG​G CTG​ATG​ATG​GGG​TTA​CAC​AC ACT​GCG​CCT​GAC​CTG​TAT​T GAG​GGG​GAG​ATT​CCA​AAC​C
AGG​AGA​TGA​CCT​CCT​GAC​A ACT​AAA​GAA​CAA​AGG​CCC​CT GCC​ATA​CAA​AGC​TTC​TCT​C
CAC​GAA​CTC​CTC​CTT​GTC​G AAG​TCC​TTG​AGT​CCC​AAC​AG
CTA​ATC​CAC​CTC​CTC​GAT​G CCA​TCA​GGT​TAC​AAC​TTA​AC
ACA​CCG​GGA​GAG​CAA​GCA​G
AGG​GCT​AAC​TAA​CCC​TGA​C