Table 4.
Summary statistics of interspersed repeats in the assembled wild yak genome.
| Type | Repbase TEs | TE proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
| Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
| DNA | 58,420,396 | 2.06 | 2,646,996 | 0.09 | 33,460,579 | 1.18 | 68,427,926 | 2.42 |
| LINE | 758,982,393 | 26.81 | 551,346,462 | 19.47 | 680,109,554 | 24.02 | 1,018,625,838 | 35.98 |
| LTR | 130,528,749 | 4.61 | 6,744,768 | 0.24 | 84,503,020 | 2.98 | 141,521,674 | 5 |
| SINE | 279,268,337 | 9.86 | 0 | 0 | 63,907,283 | 2.26 | 324,361,957 | 11.46 |
| Other | 36,651,120 | 1.29 | 123 | 0 | 63,897,730 | 2.26 | 64,143,395 | 2.27 |
| Unknown | 496,273 | 0.02 | 0 | 0 | 227,519,165 | 8.04 | 228,015,202 | 8.05 |
| Total | 1,264,055,747 | 44.65 | 560,660,398 | 19.8 | 1,128,847,407 | 39.87 | 1,396,485,261 | 49.32 |