Table 3.

The performance evaluation on HG38 and the diploid sequence of NA12878. The performance on SNV and Indel detection implies that the diploid genome sequence and the reference variants are not fully compatible

Dataset	Method	SNV		Indel		Run time (min)	Memory usage (GB)
		Precision	Recall	Precision	Recall
NA12878 (Diploid)	GSAlign	0.832	0.969	0.759	0.767	5	14
	Minimap2	0.830	0.970	0.754	0.768	65	23
	MUMmer4	0.752	0.946	0.711	0.749	3898	57
	LAST	0.832	0.969	0.760	0.764	1305	28