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. 2020 Feb 24;21:182. doi: 10.1186/s12864-020-6569-1

Table 4.

The performance comparison on HG38 and the chimpanzee (PanTro4) genome

Dataset Method Alignment length (Mbp) SNV# Indel# Run time (min)
GRCh38 Vs. PanTro4 GSAlign 2412 31,710,527 3,650,337 8
Minimap2 2791 39,242,895 4,375,360 18
MUMmer4 2661 41,545,986 5,450,956 1368
LAST 2717 35,815,610 4,483,929 884