TABLE 2.
Sample | Raw date read | Base | Valid date read | Base | Valid% read | Q20% | Q30% | GC% |
CD6A-1 | 58748442 | 8.81G | 48364460 | 7.25G | 82.32 | 99.20 | 96.44 | 49.00 |
CD6A-2 | 59452796 | 8.92G | 48959376 | 7.34G | 82.35 | 99.52 | 97.21 | 51.00 |
CD6A-3 | 58563520 | 8.79G | 48696972 | 7.30G | 83.15 | 99.13 | 95.98 | 49.00 |
FBD6-1 | 59970362 | 9.00G | 57652548 | 8.64G | 96.14 | 99.39 | 97.09 | 50.00 |
FBD6-2 | 57907066 | 8.69G | 56827140 | 8.52G | 98.14 | 99.57 | 95.75 | 50.00 |
FBD6-3 | 56905122 | 8.54G | 54152732 | 8.12G | 95.16 | 99.22 | 96.17 | 49.00 |
FAD6-1 | 65608270 | 9.84G | 57597380 | 8.64G | 87.79 | 99.55 | 96.49 | 50.00 |
FAD6-2 | 64061528 | 9.65G | 55865012 | 8.38G | 87.21 | 99.15 | 95.86 | 51.00 |
FAD6-3 | 66241238 | 9.94G | 58153066 | 8.72G | 87.79 | 99.63 | 97.94 | 50.00 |
CD6B-1 | 56804874 | 8.52G | 49590640 | 7.44G | 87.30 | 99.66 | 97.93 | 49.00 |
CD6B-2 | 57290458 | 8.59G | 50295274 | 7.54G | 87.79 | 99.38 | 96.92 | 49.00 |
CD6B-3 | 57516602 | 9.63G | 50243946 | 7.54G | 87.36 | 99.62 | 97.31 | 50.00 |
CD8-1 | 51722480 | 7.76G | 51153928 | 7.67G | 98.90 | 99.68 | 96.19 | 50.00 |
CD8-2 | 54269660 | 8.14G | 53547754 | 8.03G | 98.67 | 99.69 | 97.05 | 49.50 |
CD8-3 | 48768472 | 7.32G | 48078448 | 7.21G | 98.59 | 99.69 | 96.90 | 49.00 |
FID8-1 | 44641116 | 6.70G | 43937778 | 6.59G | 98.42 | 99.69 | 96.97 | 50.00 |
FID8-2 | 53513324 | 8.03G | 52647430 | 7.90G | 98.38 | 99.65 | 96.94 | 50.00 |
FID8-3 | 49853240 | 7.48G | 48944858 | 7.34G | 98.18 | 99.75 | 97.42 | 49.50 |