Table 1.
Genes predicted in the chloroplast genome of V. sepium.
| Category | Group of genes | Names of genes |
|---|---|---|
| Self-replication | Large subunit of ribosomal proteins | rpl2, rpl14, rpl16, rpl20, rpl23 a, rpl32, rpl33, rpl36 |
| Small subunit of ribosomal proteins | rps2, rps3, rps4, rps7, rps8, rps11, rps12 b, rps14, rps15, rps18, rps19 | |
| DNA dependent RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | |
| rRNA genes | rrn16S, rrn4.5S, rrn23S, rrn5S | |
| tRNA genes | trnA-TGC, trnC-GCA, trnD-GTC, trnE-TTC, trnF-GAA, trnG-TCC, trnH-GTG, trnI-CAT, trnI-GAT, trnK-TTT, trnL-CAA, trnL-TAA, trnL-TAG, trnM-CAT c, trnMf-CAT, trnN-GTT, trnP-GGG, trnP-TGG, trnQ-TTG, trnR-ACG, trnR-TCT, trnS-GCT, trnS-GGA, trnS-TGA, trnT-GGT, trnV-TAC, trnW-CCA, trnY-GTA | |
| Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| NADH dehydrogenase | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Cytochrome b6/f complex | petA, petB, petD, petG, petL, petN | |
| ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
| Rubisco | rbcL | |
| Other genes | Maturase | matK |
| Protease | clpP | |
| Envelope membrane protein | cemA | |
| Subunit acetyl-CoA-carboxylase | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Genes of unknow function | Conserved open reading frames | ycf1, ycf2, ycf3, ycf4 |
One open reading frame, ORF292, could not be annotated. apseudogene; btrans-splicing gene; cduplicated gene.