Table 2.
Type | LN-7 | LN-17 | LN-27 | HN-7 | HN-17 | HN-27 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
No. | % | No. | % | No. | % | No. | % | No. | % | No. | % | ||
Redundant | Raw reads | 10,621,127 | 100 | 11,752,733 | 100 | 10,898,065 | 100 | 10,652,837 | 100 | 10,948,017 | 100 | 10,475,211 | 100 |
3 AD and length filter | 3,809,346 | 36.38 | 6,656,958 | 56.05 | 5,115,582 | 46.94 | 4,985,140 | 46.62 | 6,192,961 | 56.53 | 3,646,829 | 34.73 | |
Other filters | 381,771 | 3.57 | 898,931 | 7.72 | 1,320,520 | 12.09 | 332,596 | 3.13 | 799,749 | 7.31 | 780,664 | 7.46 | |
Clean reads | 6,430,010 | 60.05 | 4,196,843 | 36.23 | 4,461,963 | 40.96 | 5,335,101 | 50.25 | 3,955,306 | 36.16 | 6,047,718 | 57.81 | |
Unique | Raw reads | 1,698,982 | 100 | 1,624,844 | 100 | 1,849,117 | 100 | 1,561,169 | 100 | 1,604,716 | 100 | 2,014,214 | 100 |
3 AD and length filter | 510,620 | 30.66 | 715,762 | 44.70 | 860,978 | 46.58 | 506,277 | 32.44 | 656,487 | 40.75 | 580,730 | 28.94 | |
Other filters | 16,242 | 0.95 | 17,121 | 1.05 | 19,361 | 1.05 | 14,521 | 0.93 | 17,403 | 1.09 | 21,412 | 1.06 | |
Clean reads | 1,172,120 | 68.39 | 891,960 | 54.25 | 968,778 | 52.37 | 1,040,371 | 66.63 | 930,826 | 58.16 | 1,412,072 | 70.00 |
No., number of reads; %, percentage of reads. The data are the means of three biological replicates.