Table 2.
DNA (P6B) binding affinities of PAX6 mutations.
| Mutation | Iris anomaly | Kd (μM) | N | △H (kJ/mol) | T△S (kJ/mol) | reference |
|---|---|---|---|---|---|---|
| WT | WT | 0.411 ± 0.068 | 0.972 ± 0.012 | −187 ± 4.61 | −150 | (—) |
| p.Gly72Cys | iris hypoplasia | 0.579 ± 0.370 | 0.762 ± 0.044 | −125 ± 13.2 | −89.5 | this study |
| p.Val84Alafs*8 | iris hypoplasia | no binding | — | — | — | this study |
| p.Gly64Val | normal iris | 2.520 ± 1.020 | 0.751 ± 0.043 | −195 ± 24.2 | −163 | 23 |
| p.Gly72Ser | iris hypoplasia | 1.200 ± 0.130 | 0.728 ± 0.009 | −115 ± 3.24 | −80.8 | 25 |
| p.Gly73Asp | aniridia | 0.489 ± 0.128 | 0.590 ± 0.014 | −83.3 ± 3.59 | −47.3 | 26 |
| p.Ser74Gly | normal iris | 0.699 ± 0.180 | 0.831 ± 0.019 | −106 ± 5.18 | −70.8 | 27 |
| p.Pro76Arg | normal iris | 0.740 ± 0.093 | 0.712 ± 0.008 | −111 ± 2.82 | −75.8 | 24 |
Kd is dissociation constant in equilibrium state; N, stoichiometry indicates the ratio of ligand-to-macromolecule binding; ΔH, enthalpy is indication of changes in hydrogen and van der Waals bonding; TΔS, entropy is indication of changes in hydrophobic interaction and conformational changes.