Table 2.

Whole genome DNA bisulfite sequencing data.

Pigs	Samples	Average depth(X)	Clean Base(GB)	Clean Reads	Mapped(%)	Conversion rate(%)	Total_ mc(%)
Donor pig	DP-blood	25	82.46	275101143	75.61	99.73	94.52
	DP-ear	29	94.26	314574836	74.93	99.64	94.62
Cloned pig	CP-blood	28	93.19	310889264	75.08	99.72	95.15
	CP-ear	29	96.51	322024573	74.97	99.65	95.41

Clean Bases (GB), number of bases after filtering. Clean Reads, the number of reads after filtering. Mapped (%), the percentage of Clean Reads mapped to the reference genome of all Clean Reads. Conversion rate (%), the percentage of Clean Reads aligned to lambda DNA and supported for methylation after treatment with bisulfite as a percentage of the total number of Clean Reads to lambda DNA. Total_mc (%), the number of clean reads matched to the reference genome relative to the amount of methylated cytosine within the clean reads matched to the reference genome.