Table 2.
Overview of TLRs in Great Gerbil and Their Location in the Genome Assembly
| Gene | Scaffold | Strand | Start | End | Size (aa) | Full-Length Coding Sequence |
|---|---|---|---|---|---|---|
| TLR1 | scaffold00357 | + | 837,967 | 840,348 | 794 | Yes |
| TLR2 | scaffold00513 | + | 45,595 | 47,946 | 784 | Yes |
| TLR3 | scaffold00205 | − | 1,713,605 | 1,703,075 | 905 | Yes |
| TLR4 | scaffold00158 | + | 3,555,106 | 3,573,424 | 838 | Yes |
| TLR5 | scaffold00165 | − | 2,379,076 | 2,376,503 | 858 | Yes |
| TLR6 | scaffold00357 | + | 820,802 | 823,186 | 795 | Yes |
| TLR7 | scaffold00186 | − | 3,421,186a | 3,418,040 | 1,049 | Yesb |
| TLR8 | scaffold00186 | − | 130 | Noc | ||
| TLR9 | scaffold00044 | + | 7,083,426a | 7,086,521 | 1,032 | Yesb |
| TLR10 | scaffold00357 | + | 341 | No | ||
| TLR11 | scaffold00001 | + | 917 | Yesd | ||
| TLR12 | scaffold00071 | − | 4,008,732 | 4,006,236 | 817 | Nod |
| TLR13 | scaffold00845 | − | 899 | Yesd |
note.—The table details which scaffolds and in what orientation each TLR is located as well as coordinates for the start and end of each gene (except for the pseudogenes) on the respective scaffolds. Information on the size of the translated amino acid sequence and whether it is complete is also shown.
a
Start of second codon in sequence.
b
Missing start codon.
c
Close to complete TIR domain plus c-terminal.
d
Contains multiple point mutations and indels causing frameshifts.