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. Author manuscript; available in PMC: 2020 Feb 27.
Published in final edited form as: Chemistry. 2018 Mar 27;24(23):6030–6035. doi: 10.1002/chem.201705771

Table 2.

Percent yield of monoadducts and crosslink adducts formed in the two-step crosslinking reactions with DMC. ND: non detected. NA: non available.

Oligonucleotide Alkylation step 9a 9b R 9b/9a 10a 10b Crosslinking efficiency
11 (GpC) first 0.54 (±0.04) 0.98 (±0.04) 1.8 (±0.07) ND ND NA
second 0.31 (±0.2) 1.20 (±0.6) 4.2 (±0.6) ND 0.60 (±0.4) 33%
12 (GpC) first 0.50 (±0.02) 1.52 (±0.07) 3.10 (±0.04) ND ND NA
second 0.12 (±0.02) 0.80 (±0.02) 6.90 (±1) ND 0.40 (±0.09) 33%
13 (CpG) first 0.92 (±0.2) 0.19 (±0.04) 0.21 (±0.06) ND ND NA
second 0.11 (±0.02) 0.13 (±0.01) 1.13 (±0.3) 0.50 (±0.2) ND 82%
14 (CpG) first 1.1 (±0.07) 0.88 (±0.08) 0.8 (±0.07) ND ND NA
second 0.14 (±0.001) 0.70 (±0.03) 4.90 (±0.2) 0.76 (±0.01) ND 84%