Table 1. Clades and genomes analyzed, with statistics on CIF estimation gene sets.
| Clade | Genome Assemblies | Total Genes | Mean Genes/ Genome (Std. Dev.) |
Grand Mean %G |
Grand Mean %C |
Grand Mean %T |
|---|---|---|---|---|---|---|
| Humans | Hg38 | 431 | 431 | 32.5 | 25.7 | 23.0 |
|
L. major Clade (n = 8) |
1. L. major Friedlin 2. L major LV39c5 3. L. major SD75 4. L. tropica L590 5. L. aethiopica L147 6. L. gerbilli LEM452 7. L. turanica LEM423 8. L. arabica LEM1108 |
664 | 83 (0.6) |
31.9 | 26.1 | 23.4 |
|
L. infantum Clade (n = 3) |
1. L, donovani BHU1220, 2. L. donovani BPK282A1 3. L. infantum JPCM5 |
250 | 83.33 (0.2) | 31.9 | 26.1 | 23.3 |
|
L. mexicana Clade (n = 2) |
1. L. amazonensis MHOMBR71973M2269 2. L. mexicana MHOMGT2001U1103 |
148 | 74 (4.7) |
31.8 | 25.9 | 23.4 |
|
Viannia Subclade (n = 4) |
1. L. braziliensis MHOMBR75M2904 2. L. braziliensis MHOMBR75M2903 3. L. panamensis MHOMPA94PSC1 4. L. panamensis MHOMCOL81L13 |
327 | 81.75 (2.5) | 31.8 | 26.1 | 23.4 |
|
L. enriettii Clade (n = 2) |
1. Leishmania sp MARLEM2494 2. Leishmania enriettii LEM3045 |
160 | 80 (0.5) |
31.9 | 25.9 | 23.4 |
|
Leptomonas/ Crithidia Clade (n = 3) |
1. Crithidia fasciculata CfCl 2. Leptomonas seymouri ATCC30220 3. Leptomonas pyrrhocoris H10 |
300 | 100 (2.4) |
31.8 | 26.0 | 23.3 |
|
American Trypanosoma (n = 11) |
1. T. grayi ANR4 2. T. cruzi CL Brener Esmeraldo-like 3. T. cruzi CL Brener Non-Esmeraldo-like 4. T. cruzi cruzi Dm28c 5. T. cruzi Dm28c 6. T. cruzi Esmeraldo 7. T. cruzi JRcl4 8. T. cruzi marinkelleiB7 9. T. cruzi SylvioX10-1 10. T. cruzi SylvioX10-1-2012 11. T. cruzi Tulacl2 |
773 | 70.27 (5.7) |
32.0 | 26.3 | 23.0 |
|
African Trypanosoma (n = 6) |
1.T. bruceigambiense DAL972 2.T. brucei Lister427 3.T. brucei TREU927 4.T. evansi STIB805 5.T. congolense IL3000, 6. T.vivax Y486 |
402 | 67 (2.1) |
32.2 | 26.1 | 23.1 |