Table 7.
Differentially expressed (DE)/expressed sequence tags (ESTs) between tuber stages taking a role in cell development.
EST ID | Enzyme | Gene expression profile | References | ||||||
---|---|---|---|---|---|---|---|---|---|
UNIPROT name | KEGG code | GO Biol. Proc. | Contest | ↑ | FC | p | DE source | ||
CHTS18557.b1 J07.ab1 |
UDP-galactose transporter 3 |
– | Cell wall assembly | T0 vs. T3 | T0 | 1.04 | * | K8-HS142 | Norambuena et al. (2002) |
T0 vs. Tm | T0 | 1.47 | *** | Both clones | |||||
CHTM21118.b1 L24.ab1 |
T0 vs. Tm | T0 | 1.14 | *** | Both clones | ||||
CHTS12971.b1 F04.ab1 |
β-1,4-glucan synthase | EC:2.4.1.12 | T0 vs. Tm | T0 | 1.07 | *** | K8-HS142 | Buckeridge (2010) | |
CHTM25460.b1 H05.ab1 |
MAP3K ε protein kinase | EC:2.7.11.25 | Cell growth | T0 vs. Tm | T0 | 1.42 | ** | K8-HS142 | Suarez Rodriguez et al. (2010) |
CHTM2635.b1 F12.ab1 |
T0 vs. Tm | T0 | 1.73 | *** | Both clones | ||||
CHTM2566.b1 K18.ab1 |
Cryptochrome 1 protein 2 | – | T0 vs. Tm | Tm | 1.07 | *** | K8-HS142 | Lin et al. (1996) | |
CHTM18141.b1 I23.ab1 |
Zinc finger CCCH transcription factor | – | Uni dimensional cell growth | T0 vs. Tm | T0 | 1.44 | *** | Both clones | Wang et al. (2008) |
CHTM1800.b1 O18.ab1 |
Membrane steroid-binding protein 2 | EC:4.1.99.3 | T0 vs. Tm | Tm | 1.39 | ** | K8-HS142 | Yang et al. (2005) | |
CHTS11585.b1 A17.ab1 |
Pectin methylesterase | EC:3.1.1.11 | Cell wall modification | T0 vs. Tm | T0 | 1.14 | *** | Both clones | Micheli (2001) |
CHTS9186.b3 D18.ab1 |
T0 vs. Tm | T0 | 1.12 | *** | K8-HS142 | ||||
CHTM9629.b1 I07.ab1 |
Non-ATPase subunit 26S proteasome | – | Cell wall organization | T0 vs. Tm | T0 | 1.02 | ** | VR | Smalle and Viestra (2004) |
CHTS9721.b1 B07.ab1 |
Polyubiquitin 2 protein | – | Apoptotic process | T0 vs. Tm | Tm | 1.26 | * | VR | Zhong et al. (2005) |
CHTS12298.b1 C03.ab1 |
Water channel protein | – | Water channel activity | T0 vs. Tm | T0 | 1.05 | *** | VR | Chrispeels and Maurel (1994) |
CHTM25693.b1 J16.ab1 |
T0 vs. Tm | T0 | 1.15 | ** | K8-HS142 | ||||
CHTS15962.b1 C08.ab1 |
Tonoplast intrinsic protein | – | T0 vs. Tm | T0 | 1.44 | ** | Both clones | Ludevid et al. (1992) | |
CHTM4514.b1 D02.ab1 |
Auxin influx carrier protein | – | Auxin transport | T0 vs. Tm | T0 | 1.13 | *** | VR | Parry et al. (2001) |
ESTs implied in “Cellular processes” (GO ID:0009987) are shadowed in gray+, those in “Water transport” (GO ID:0006833) in gray++, those in “Hormone transport” (GO ID:0009914) in gray+++. DE source indicates the clone/s contributing to the DE condition. Legend as in Table 3.