Table 2.
Statistics of ROH observed in diverse Indian native cattle breeds (Bos indicus) under different length class (ROH1-2 Mb, ROH2-4 Mb, ROH4-8 Mb, ROH8-16 Mb, ROH > 16 Mb, ROH > 1 Mb and ROH > 8 Mb).
| Breeds | Sahiwal | Tharparkar | Gir | Hariana | Kangayam | Ongole | Vechur |
|---|---|---|---|---|---|---|---|
| n ROH | 320 | 453 | 680 | 475 | 1024 | 761 | 425 |
|
ROH1-2 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
172 (53.75) 1.29 ± 0.26 0.68 |
231 (50.99) 1.30 ± 0.27 0.70 |
342 (50.30) 1.42 ± 0.27 1.24 |
254 (53.47) 1.32 ± 0.25 0.74 |
411 (40.14) 1.36 ± 0.30 1.40 |
365 (47.96) 1.35 ± 0.27 1.15 |
188 (44.24) 1.30 ± 0.25 0.61 |
|
ROH2-4 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
65 (20.31) 2.97 ± 0.61 0.59 |
72 (15.89) 2.83 ± 0.58 0.48 |
153 (22.50) 2.79 ± 0.52 1.11 |
98 (20.63) 2.83 ± 0.57 0.612 |
251 (24.51) 2.87 ± 0.58 1.79 |
189 (24.84) 2.80 ± 0.59 1.24 |
73 (17.18) 2.79 ± 0.57 0.51 |
|
ROH4-8 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
40 (12.50) 5.72 ± 1.15 0.70 |
67 (14.80) 6.12 ± 1.18 0.96 |
91 (13.38) 5.86 ± 1.12 1.37 |
62 (13.05) 5.58 ± 1.21 0.76 |
212 (20.70) 5.61 ± 1.10 2.96 |
107 (14.06) 5.45 ± 1.07 1.38 |
52 (12.24) 5.73 ± 1.13 0.74 |
|
ROH8-16 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
26 (8.13) 11.93 ± 1.87 0.95 |
55 (12.14) 11.01 ± 2.41 1.42 |
48 (7.06) 12.86 ± 2.23 2.39 |
42 (8.85) 11.30 ± 2.36 1.05 |
113(11.04) 10.65 ± 2.06 2.99 |
66 (8.67) 11.09 ± 2.20 1.71 |
56 (13.17) 10.92 ± 1.97 1.52 |
|
ROH > 16 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
17 (5.31) 26.07 ± 9.38 1.36 |
28 (6.18) 27.44 ± 13.51 1.80 |
46 (6.76) 26.32 ± 8.8 3.28 |
19 (4.00) 25.60 ± 9.53 1.08 |
37 (3.61) 23.41 ± 8.34 2.16 |
34 (4.47) 25.26 ± 9.70 2.01 |
56 (13.17) 28.14 ± 10.02 3.99 |
|
ROH > 1 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
277 (86.56) 2.32 ± 1.66 1.97 |
370 (81.68) 2.47 ± 1.92 2.14 |
586 (86.18) 2.39 ± 1.62 3.72 |
414 (87.16) 2.31 ± 1.61 2.12 |
874 (85.35) 2.41 ± 1.82 6.14 |
661 (86.86) 2.43 ± 1.59 3.77 |
313 (73.65) 2.38 ± 1.71 1.86 |
|
ROH > 8 Mb
NROH (percent) Mean length (Mb) ± SD Genome coverage (%) |
43 (13.44) 17.52 ± 9.19 2.30 |
83 (18.32) 16.55 ± 11.18 3.21 |
94 (13.82) 18.90 ± 10.13 4.72 |
61 (12.84) 15.76 ± 8.7 2.13 |
150 (14.65) 13.80 ± 7.1 5.15 |
100 (13.14) 15.91 ± 8.95 3.72 |
112 (26.35) 19.78 ± 11.44 5.51 |