Table 8.

Predicted R genes induced by CEF-082 and V. dahliae

Transcript ID	Type	log2-Fold Change (12 h)	log2-Fold Change (48 h)	Nr Functional Annotation
Gh_A05G0560	/	0.753709773	1.881639236	DNA-damage-repair/toleration protein DRT100-like [Gossypium raimondii]
Gh_A05G1020	/	1.557304461	1.177105999	CBL-interacting serine/threonine-protein kinase 25-like [Gossypium hirsutum]
Gh_A05G3196	/	1.49233142	3.400801654	cyclic nucleotide-gated ion channel 2-like [Gossypium arboreum]
Gh_A05G3470	/	−1.679248485	3.0042548	NADPH:quinone oxidoreductase-like [Gossypium arboreum]
Gh_A06G1701	/	1.11748676	1.125924709	shikimate O-hydroxycinnamoyltransferase-like [Gossypium arboreum]
Gh_A09G1415	/	2.763055805	1.138512634	peroxidase 21-like [Gossypium hirsutum]
Gh_A11G0631	/	−1.427211837	1.313850285	probable calcium-binding protein CML45 [Gossypium hirsutum]
Gh_A11G1367	/	−2.131571879	−1.430486114	uncharacterized protein LOC105803388 [Gossypium raimondii]
Gh_A11G3297	/	4.769980778	−6.621901362	uncharacterized protein LOC107935227 [Gossypium hirsutum]
Gh_D02G0258	/	−2.480311701	−1.300029512	receptor-like protein 12 [Gossypium hirsutum]
Gh_D04G0409	/	8.681445478	5.183990265	cyclic nucleotide-gated ion channel 2-like [Gossypium hirsutum]
Gh_D05G0689	/	0.530244279	2.104072295	DNA-damage-repair/toleration protein DRT100 [Theobroma cacao]
Gh_D07G1197	/	2.197263059	1.546938795	flavonoid 3′,5′-hydroxylase 2-like [Gossypium hirsutum]
Gh_D08G1512	/	1.61343892	2.05940005	hypothetical protein B456_002G144600 [Gossypium raimondii]
Gh_D09G0858	/	−1.30017514	−1.614570284	hypothetical protein B456_006G104900, partial [Gossypium raimondii]
Gh_D10G1431	/	1.879317791	1.074465933	chalcone synthase [Kandelia candel]
Gh_D11G0741	/	−1.323988617	1.425564743	probable calcium-binding protein CML45 [Gossypium hirsutum]
Gh_D11G1512	/	−1.351190116	−1.111728188	uncharacterized protein LOC105803388 [Gossypium raimondii]
Gh_D11G3107	/	3.221799962	−4.647807823	uncharacterized protein LOC107925949 [Gossypium hirsutum]