Table 1.
NGS data status and general features of the 24 newly sequenced Orchidaceae plastomes.
| Subfamily | Tribe | Scientific Name | NGS Method | # of raw reads | # of trimmed reads | Coverages (X) | Length (bp) | Voucher specimen and/or DNA number |
|---|---|---|---|---|---|---|---|---|
| Epidendroideae | Collabieae | Calanthe aristulifera | MiSeq | 10,977,664 | 555,650 | 851.4 | 158,204 | NIBRVP0000709265 |
| Epidendroideae | Collabieae | Calanthe bicolor | HiSeq | 38,596,340 | 585,710 | 1,252.6 | 158,070 | PDBK2012-1749 |
| Epidendroideae | Cymbidieae | Dipodium roseum | MiSeq | 23,515,448 | 871,246 | 1,733.7 | 141,209 | PDBKTA2019-0006 |
| Epidendroideae | Epidendreae | Corallorhiza maculata var. maculata | MiSeq | 10,817,394 | 424,348 | 841.7 | 146,198 | PDBK2017-1544 |
| Epidendroideae | Epidendreae | Cremastra unguiculata | MiSeq | 10,280,912 | 438,352 | 884.1 | 159,341 | NIBRVP0000658615 |
| Epidendroideae | Epidendreae | Oreorchis patens | MiSeq | 8,530,614 | 553,290 | 363.8 | 158,542 | PDBK2007-0151 |
| Epidendroideae | Gastrodieae | Gastrodia elata | MiSeq | 12,318,196 | 676,842 | 546.2 | 35,056 | PDBK2017-1545 |
| Epidendroideae | Malaxideae | Bulbophyllum inconspicuum | MiSeq | 9,612,620 | 604,200 | 1,125.2 | 149,548 | PDBK2012-0213 |
| Epidendroideae | Malaxideae | Dendrobium moniliforme | HiSeq | 8,745,236 | 614,130 | 869.0 | 151,711 | PDBK2012-0008 |
| Epidendroideae | Malaxideae | Dendrobium moniliforme ‘Royal Dream' | HiSeq | 20,728,340 | 616,358 | 1,211.9 | 151,695 | PDBK2014-0012 |
| Epidendroideae | Malaxideae | Dendrobium moniliforme ‘Sangeum' | HiSeq | 10,876,884 | 673,118 | 1277.4 | 151,711 | PDBK2014-0009 |
| Epidendroideae | Malaxideae | Liparis auriculata | MiSeq | 8,360,832 | 686,628 | 1,353.2 | 153,460 | NIBRVP0000703422 |
| Epidendroideae | Malaxideae | Liparis makinoana | MiSeq | 14,299,168 | 705,140 | 1,384.2 | 153,093 | PDBK2012-0543 |
| Epidendroideae | Neottieae | Epipactis thunbergii | MiSeq | 21,093,888 | 897,388 | 706.4 | 159,279 | PDBK2017-0509 |
| Epidendroideae | Vandeae | Sedirea japonica | MiSeq | 12,019,968 | 391,094 | 842.2 | 146,942 | PDBK2019-0551 |
| Orchidoideae | Cranichideae | Goodyera rosulacea | MiSeq | 18,736,600 | 137,286 | 287.4 | 152,831 | PDBK2012-0647 |
| Orchidoideae | Cranichideae | Hetaeria shikokiana | MiSeq | 10,227,090 | 105,074 | 540.2 | 130,934 | PDBK2018-0672 |
| Orchidoideae | Orchideae | Amitostigma gracile | MiSeq | 8,563,894 | 137,432 | 220.4 | 156,120 | PDBK2008-0404 |
| Orchidoideae | Orchideae | Dactylorhiza viridis var. coreana | MiSeq | 8,179,110 | 180,240 | 266.6 | 153,549 | PDBK2011-0840 |
| Orchidoideae | Orchideae | Galearis cyclochila | MiSeq | 7,859,188 | 224,736 | 397.2 | 153,928 | PDBK2000-0786 |
| Orchidoideae | Orchideae | Gymnadenia conopsea | MiSeq | 8,967,924 | 220,376 | 550.3 | 153,876 | PDBK2011-0894 |
| Orchidoideae | Orchideae | Habenaria chejuensis | MiSeq | 8,865,896 | 359,614 | 576.0 | 153,896 | PDBK2018-1246 |
| Orchidoideae | Orchideae | Habenaria flagellifera | MiSeq | 10,712,312 | 233,302 | 439.0 | 151,210 | PDBK2018-1247 |
| Orchidoideae | Orchideae | Platanthera mandarinorum | MiSeq | 8,745,236 | 221,761 | 541.1 | 154,162 | PDBK2013-0398 |