Table 2. Performance of proxy predictors at the 10% surveillance threshold.
Model 1 predicted the fate of a cluster using the top two predictors in our best fit model. The two proxy models used data from two time points, when the cluster reached relative frequencies of 6% (t1) and 10% (t2). Model 2 considered the time elapsed between and the number of competing expanding clusters. Model 3 considered the relative fold change in the focal cluster between the two time points and the population-wide variance in fold change. Performance values are the median of five-fold cross-validation.
Model | Type | AUC | PPV | Sensitivity |
---|---|---|---|---|
1. Rc/〈R〉+var(R) | Actual | 0.88 | 0.81 | 0.89 |
2. | Proxy | 0.78 | 0.74 | 0.87 |
3. χc(t1,t2)+var(Δj(t1t2)) | Proxy | 0.67 | 0.66 | 0.95 |