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. 2020 Feb 18;16(2):e1007683. doi: 10.1371/journal.pcbi.1007683

Table 2. Performance of proxy predictors at the 10% surveillance threshold.

Model 1 predicted the fate of a cluster using the top two predictors in our best fit model. The two proxy models used data from two time points, when the cluster reached relative frequencies of 6% (t1) and 10% (t2). Model 2 considered the time elapsed between and the number of competing expanding clusters. Model 3 considered the relative fold change in the focal cluster between the two time points and the population-wide variance in fold change. Performance values are the median of five-fold cross-validation.

Model Type AUC PPV Sensitivity
    1. Rc/〈R〉+var(R) Actual 0.88 0.81 0.89
    2. δc(t1,t2)+NΔj(t1t2)>1 Proxy 0.78 0.74 0.87
    3. χc(t1,t2)+var(Δj(t1t2)) Proxy 0.67 0.66 0.95