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Scientific Reports logoLink to Scientific Reports
. 2020 Feb 28;10:3750. doi: 10.1038/s41598-020-60822-9

MRI Radiomic Features: Association with Disease-Free Survival in Patients with Triple-Negative Breast Cancer

Sungwon Kim 1, Min Jung Kim 1, Eun-Kyung Kim 1, Jung Hyun Yoon 1, Vivian Youngjean Park 1,
PMCID: PMC7048756  PMID: 32111957

Abstract

Radiomic features hold potential to improve prediction of disease-free survival (DFS) in triple-negative breast cancer (TNBC) and may show better performance if developed from TNBC patients. We aimed to develop a radiomics score based on MRI features to estimate DFS in patients with TNBC. A total of 228 TNBC patients who underwent preoperative MRI and surgery between April 2012 and December 2016 were included. Patients were temporally divided into the training (n = 169) and validation (n = 59) set. Radiomic features of the tumor were extracted from T2-weighted and contrast-enhanced T1- weighted MRI. Then a radiomics score was constructed with the least absolute shrinkage and selection operator regression in the training set. Univariate and multivariate Cox proportional hazards models were used to determine what associations the radiomics score and clinicopathologic variables had with DFS. A combined clinicopathologic-radiomic (CCR) model was constructed based on multivariate Cox analysis. The incremental values of the radiomics score were evaluated by using the integrated area under the receiver operating characteristic curve (iAUC) and bootstrapping (n = 1000). The radiomics score, which consisted of 5 selected MRI features, was significantly associated with worse DFS in both the training and validation sets (p = 0.002, p = 0.033, respectively). In both the training and validation set, the radiomics score showed comparable performance with the clinicopathologic model. The CCR model demonstrated better performance than the clinicopathologic model in the training set (iAUC, 0.844; difference in iAUC, p < 0.001) and validation set (iAUC, 0.765, difference in iAUC, p < 0.001). In conclusion, MRI-based radiomic features can improve the prediction of DFS when integrated with clinicopathologic data in patients with TNBC.

Subject terms: Biomarkers, Medical research, Oncology

Introduction

Breast cancer is a heterogeneous disease, and comprehensive genomic analysis has revealed the existence of four main breast cancer classes1, similar to the intrinsic subtypes characterised by microarray-based gene expression profiling2. Although each subtype shows different prognosis and response to treatment3, such genomic tests are not easily available in much of the world for financial and logistical reasons. Therefore, in clinical practice, surrogate approaches have been developed which incorporate more commonly available immunohistochemical tests for the estrogen receptor (ER) and progesterone receptor (PR) and in situ hybridization tests for the human epidermal growth factor receptor 2 (HER2) overexpression or amplification4.

Whereas HER2-positive tumors have been the subject of great clinical success due to effective therapeutic targeting of HER25, chemotherapy remains the only established option for triple-negative breast cancers (TNBC). TNBC comprises 10–20% of all breast cancers, and has been associated with early relapse and worse survival6. However, there is substantial heterogeneity in the individual outcomes of patients with TNBC6. Therefore, many efforts have been made to improve risk stratification in patients with TNBC, including attempts to identify possible imaging biomarkers for this subgroup710.

During the past five years, radiomics research has shown exponential progress in the field of oncology, and has also been actively applied to breast imaging11. Recently, radiomic features observed at preoperative staging magnetic resonance imaging (MRI) were reported to be independent biomarkers for disease-free survival (DFS) in patients with invasive breast cancer12. However, the majority of breast cancers included in this previous study were luminal subtype tumors, with the radiomics signature and the triple-negative subtype being identified as independent prognostic factors for DFS12. However, the imaging features of TNBC differ from non-TNBC subtypes, and semantic MRI features that are associated with worse survival also differ between breast cancer subtypes8,13,14. Therefore, radiomic features that predict survival may differ between TNBC and non-TNBC turmors, and can potentially show better performance if they have been developed from a subgroup made up of only TNBC patients.

Therefore, the purpose of this study was to develop a radiomics score based on MRI features to estimate DFS in patients with TNBC.

Results

Patient characteristics and survival outcomes

The median follow-up period was 48.0 months (range, 5.0–80.0 months). Disease recurred in 32 of 228 patients (14.0%) at a median 12.5 months (range, 2.5–60.2 months). Among these 32 patients, 16 (50.0%) had distant recurrence, 12 (37.5) had both distant and locoregional recurrence, and 4 (12.5%) had locoregional recurrence. Thirteen patients died during treatment for recurrence, with a median time to death of 16.5 months (range, 11.0–45.0 months).

The characteristics of the patients in the training and validation sets are shown in Table 1. None of the clinicopathologic variables differed between the two cohorts.

Table 1.

Patient characteristics in the training and validation set.

Characteristics Training set (n = 169) Validation set (n = 59) p value
Age, years* 52.2 ± 12.5 53.7 ± 11.5 0.426
Tumor size on MRI, mm* 27.5 ± 16.0 28.1 ± 16.1 0.789
Pathological T category 0.120
   pT1 114 (67.5) 37 (62.7)
   pT2 47 (27.8) 22 (37.3)
   pT3 8 (4.7) 0 (0)
Pathological N category 0.708
   pN0 134 (79.3) 44 (74.6)
   pN1 25 (14.8) 10 (16.9)
   pN2 10 (5.9) 5 (8.5)
Type of surgery 0.896
   Breast-conserving surgery 113 (66.9) 40 (67.8)
   Mastectomy 56 (33.1) 19 (32.2)
Adjuvant radiation therapy 0.878
   No 30 (17.8) 11(18.6)
   Yes 139 (82.2) 48 (81.4)
Neoadjuvant chemotherapy 0.871
   No 125 (74.0) 43 (72.9)
   Yes 44 (26.0) 16 (27.1)
Adjuvant chemotherapy 0.706
   No 59 (34.9) 19 (32.2)
   Yes 110 (65.1) 40 (67.8)
Histological grade 0.531
   1 or 2 61 (36.1) 24 (40.7)
   3 108 (63.9) 35 (59.3)
Lymphovascular invasion 0.818
   No 156 (92.3) 55 (93.2)
   Yes 13 (7.7) 4 (6.8)

Note.—Unless otherwise noted, data are numbers of patients, with percentages in parentheses.

*Data are means ± standard deviations.

Feature selection, radiomics score building and validation

Of the extracted radiomic features, we selected 2412 radiomic features with a ICC value greater than 0.75. These features were reduced to five potential predictors with nonzero coefficients in the LASSO Cox regression model based on the 169 patients in the training set. The five predictors consisted of one feature from contrast-enhanced T1-weighted (CE T1W) images and four features from T2-weighted (T2W) images. The radiomics score (Rad-score) was constructed by combining these five features, with a Rad-score calculated for each patient as a linear combination of the selected features that were weighted by their respective coefficients (Supplementary Information).

Among clinicopathologic factors, tumor size on MRI, pathologic T category, pathologic N category, type of surgery, neoadjuvant chemotherapy, adjuvant chemotherapy, lymphovascular invasion were associated with worse DFS at univariate analysis (Table 2). In multivariate analysis, pathological N category (pN1 vs. pN0, HR 2.906, p = 0.035; pN2 vs. pN0, HR 6.622, p = 0.001) and lymphovascular invasion (HR 2.566, p = 0.046) were identified as independent factors. Multivariate Cox analysis, including these two clinicopathologic independent factors and the Rad-score, confirmed that the Rad-score was an independent factor in both the training set (HR, 78.182, p = 0.002) and validation set (HR, 210.516, p = 0.033; Table 3). In the Rad-score-only model, the optimal cutoff of the Rad-score for differentiating patients into either the high-risk and low-risk group was obtained in the training data set based on the maximally selected log-rank statistic (log-rank test, p < 0.001,). When the validation set was stratified into the high-risk and low-risk groups using the cutoff derived from the training set, the survival curves of the two groups were significantly different (p = 0.013) (Fig. 1).

Table 2.

Survival analysis of DFS according to clinicopathologic variables.

Characteristics Univariate Multivariate
HR p value HR p value
Age, years

0.979

(0.950, 1.008)

0.158
Tumor size on MRI (mm)

1.023

(1.008, 1.039)

0.003

0.993

(0.972, 1.015)

0.532
Pathological T category
   pT1
   pT2

2.749

(1.341, 5.637)

0.006

1.812

(0.775, 4.240)

0.170
   pT3

2.901

(0.659, 12.78)

0.159

1.529

(0.316, 7.391)

0.597
Pathological N category
   pN0
   pN1

6.416

(2.826, 14.56)

<0.001

2.906

(1.080, 7.821)

0.035
   pN2

16.984

(6.977, 41.34)

<0.001

6.622

(2.099, 20.887)

0.001
Type of surgery
   Breast-conserving surgery
   Mastectomy

3.873

(1.892, 7.926)

<0.001

2.281

(0.963, 5.402)

0.061
Adjuvant radiation therapy
   No
   Yes

1.211

(0.466, 3.146)

0.694
Neoadjuvant chemotherapy
   No
   Yes

5.231

(2.575, 10.63)

<0.001

1.320

(0.267, 6.528)

0.733
Adjuvant chemotherapy
   No
   Yes

0.220

(0.106, 0.456)

<0.001

0.364

(0.077, 1.719)

0.202
Histological grade
   1 or 2
   3

1.321

(0.626, 2.791)

0.465
Lymphovascular invasion
   No
   Yes

10.195

(4.881, 21.29)

<0.001

2.566

(1.018, 6.469)

0.046

Table 3.

Prognostic factors of disease-free survival for the training and validation set in the combined clinicopathologic and radiomic model.

Characteristics Training set (n = 169) Validation set (n = 59)
Univariate Multivariate Univariate Multivariate
HR p value HR p value HR p value HR p value
Rad-score 1.690 (1.305, 2.188) <0.001 1.546 (1.176, 2.033) 0.002 2.065 (1.226, 3.480) 0.006 1.707 (1.043, 2.795) 0.033
Pathological N category
   pN0
   pN1 6.129 (2.429, 15.460) <0.001 3.056 (1.078, 8.661) 0.036 7.019 (1.171, 42.080) 0.033 3.659 (0.4741, 28.232) 0.214
   pN2 18.821 (6.956, 50.920) <0.001 7.603 (2.162, 26.735) 0.002 12.468 (1.748, 88.910) 0.012 3.003 (0.3211, 28.078) 0.335
Lymphovascular invasion
   No
   Yes 10.858 (4.754, 24.800) <0.001 2.950 (1.047, 8.308) 0.041 7.023 (1.351, 36.520) 0.021 3.114 (0.4568, 21.220) 0.246

Figure 1.

Figure 1

Kaplan-Meier survival analyses were performed according to the radiomics score for patients in the training data set (a) and those in the validation data set. (b) The validation set was stratified into a low-and high-risk group based on a cut-off value determined in the training data set. A significant association of the radiomics score with DFS was shown in the training data set, which was then confirmed in the validation data set.

Development and validation of the CCR Model

A clinicopathologic model and a CCR model that incorporated the radiomics score and significant clinicopathologic factors in the data set were also established. We evaluated the performance of the three models for prediction of DFS. In the training set, the radiomics score (Rad-score-only model) showed a prognostic performance (iAUC, 0.747 [95% CI: 0.668, 0.824]) comparable with the clinicopathologic model (iAUC, 0.764 [95% CI: 0.669, 0.853]), without statistically significant difference (difference in iAUC: −0.017 [95% CI: −0.127, 0.091]). The highest prognostic performance was observed with the CCR model (iAUC, 0.844 [95% CI: 0.771, 0.912]), which showed a significant improvement in survival prediction compared to the clinicopathologic model (difference in iAUC: 0.080 [95% CI: 0.029, 0.144], p < 0.001) (Table 4).

Table 4.

Comparison of prognostic performance between the clinicopathologic model and combined clinicopathologic and radiomic model.

Set CP model Radiomic model CCR model Differences between the CCR and CP model (CI) p value
Training set 0.764 (0.669, 0.853) 0.747 (0.668, 0.824) 0.844 (0.771, 0.912) 0.080 (0.029, 0.144) <0.001
Validation set 0.691 (0.648, 0.719) 0.701 (0.674, 0.725) 0.765 (0.724, 0.790) 0.073 (0.034, 0.114) <0.001

Note.—Performance values were measured using iAUC, and the values in parentheses are the confidence interval.

CP model clinicopathologic model; CCR model combined clinicopathologic and radiomic model; CI confidence intervals.

When tested in the validation set, the radiomcs score yielded an iAUC of 0.701 (95% CI: 0.674, 0.725). The radiomics score showed comparable performance with the clinicopathologic model (iAUC, 0.691 [95% CI: 0.648, 0.719]), without statistically significant difference (difference in iAUC: 0.009 [95% CI: −0.028, 0.058]). The CCR model (iAUC, 0.765 [95% CI: 0.724, 0.790]) showed significant improvement over the clinicopathologic model for the prediction of DFS in the validation set (difference in iAUC, 0.073 [95% CI: 0.034, 0.114], p < 0.001) (Table 4).

The interobserver reproducibility of the extracted radiomic features showed ICC values ranging from 0.329 to 1.00. The finally selected radiomic features showed high ICC values (median, 0.964; range, 0.785, 0.994) (Supplementary Table S1)

Discussion

In this study we showed that the radiomics score was associated with DFS in both the training and validation data set, and that it remained an independent prognostic factor at multivariate analysis. Furthermore, the CCR model showed a significant improvement over the clinicopathologic model. As the clinicopathologic model was determined by the entire data set (n = 228), this approach would have provided a larger advantage to the clinicopathologic model. Nonetheless, the radiomics score enabled further improvement in DFS prediction, showing that radiomic features do contain additional information that can potentially be used in risk assessment.

In the last few years, researchers have used various approaches when applying MRI-based radiomic features in breast imaging, but most studies have focused on the differential diagnosis of breast lesions, the prediction of pathological characteristics, and response to neoadjuvant chemotherapy1522. Recently, one study reported that a MRI-based radiomics signature was an independent predictor of DFS12. However, only 17% of its validation set were TNBC, and the triple-negative subtype remained an independent prognostic factor12. TNBC shows different imaging features compared to other breast cancer subtypes, often presenting with areas of intratumoral high T2 signal intensity, lobulated shape, rim enhancement, and smooth margins14. Previous studies which investigated the role of radiomics in differentiating breast cancer subtypes have also shown that radiomic features related to lesion shape contribute the most among other features when discriminating TNBC from other subtypes19,23. Interestingly, whereas one shape-related radiomic feature was selected in the aforementioned study from Park et al.12, none of the shape-related features were selected in our study. Our study results may indicate that shape-related features may be less helpful in risk stratification for TNBC.

However, similar to the study of Park et al. in which all other radiomic features were T2W-imaging based features, we found that four of the five selected radiomic features in our study were also extracted from T2W images. Another previous study also reported that breast cancers that appear more heterogeneous on T2W images (higher entropy) exhibited poorer recurrence-free survival24. In addition, in one study which investigated the performance of a MRI-based radiomics classifier for predicting Ki-67 status in breast cancer, the T2W-imaging-based radiomics classifier significantly predicted Ki-67 status and outperformed the CE T1W-imaging-based rclassifier16. As Ki-67 is a well-established prognostic marker in breast cancer, especially in ER-positive breast cancer25, this may partially explain the high contribution of T2W images for predicting survival using radiomic features. Our results and previous studies highlight the importance of including T2W images for analysis in radiomics research regarding survival in breast cancer.

In an attempt to improve risk stratification in TNBC, previous studies have aimed to identify MRI features associated with survival, with mixed results7,8,26. Whereas rim enhancement was associated with poorer outcome only in TNBC in one study26, another reported that rim enhancement was associated with poor distant metastasis-free survival only in hormone receptor-positive or HER2 positive tumors8. Compared to semantic imaging features, quantitative radiomic features have the advantage of being less affected by interobserver variability. In our study, we found that the radiomics score was not only significantly associated with DFS in TNBC but also improved its prediction. As the selected independent clinicopathologic factors were based on peritumoral or non-tumor characteristics (pathological N category, lymphovascular invasion), it is likely that tumor-based radiomic features provided complementary information that could further improve the performance of both the clinicopathologic model or the radiomics score alone.

One difficulty with research on TNBC is its relatively small proportion among breast cancer (10–20%)27. This is especially true for studies related to survival, which require longer follow-up and thus, are more affected by follow-up loss. In order to construct both the training and validation data set, we included patients without regard to neoadjuvant chemotherapy. Although this approach has been used in previous studies and despite the fact that we included treatment variables in analysis28,29, it may be more desirable to construct a radiomics score separately based on neoadjuvant chemotherapy status. Furthermore, as we aimed to compare the performance of the radiomics score with a clinicopathological model for estimating DFS, patients achieving pCR were eventually excluded due to unavailable pathological data. Therefore, our results may not be transferable to patients with TNBC who achieve pCR. Yet, our preliminary study showed that the radiomics score can potentially improve risk stratification in TNBC, and that T2W-imaging-based features provide valuable information regarding survival, similar to other breast cancer subtypes. These results will aid in the design of future studies with larger study populations, more preferably of multi-center design, that will confirm the prognostic role of radiomics for TNBC.

Our study had several limitations. First, this was a retrospective, single-institution study, and selection bias is inevitable. As all images were obtained using the same MRI protocol and scanner, it may be difficult to generalise our results to different settings. In addition, as we did not perform external validation using an independent data set from different institutions, there is a possibility of overfitting. Second, this study had a relatively small sample size and relatively short follow-up period. As TNBC represents a small proportion of primary breast cancers, future multi-center studies with larger study populations and longer follow-up are needed to determine the role of radiomics as a prognostic tool in TNBC patients, including its association with overall survival. Third, lesion segmentation was performed by one radiologist using semiautomatic software. Although we discarded radiomic features with an ICC value of less than 0.75, future software that can perform fully automatic segmentation can help reduce interobserver variability and improve the feasibility of performing radiomics analysis in daily practice. Finally, as MRI is not universally performed for preoperative evaluation of breast cancer, the clinical utility of such MRI-based radiomics features may be potentially limited in actual clinical practice.

In conclusion, our preliminary study shows that the identified radiomics score has the potential to be used as a biomarker for risk stratification in patients with TNBC. The CCR model, which incorporated the radiomics score with clinicopathologic data, showed significant improvement in the prediction of DFS. However, further validation with larger study populations is required to confirm the prognostic role of radiomics in TNBC.

Methods

Patients

The institutional review board of Severance hospital approved this retrospective study and the requirement for informed consent was waived. All research was performed in accordance with relevant guidelines/regulations. We identified 342 consecutive women with triple-negative (ie., estrogen-receptor-negative, progesterone receptor-negative, and human epidermal growth factor receptor 2 [HER2]-negative) invasive breast cancer who underwent surgery following preoperative MRI using a 3-T scanner (Discovery MR750w; GE Healthcare) at our institution between April 2012 and December 201630,31.

Of the initial 342 patients, we excluded 114 patients for the following reasons: patients with recurrent breast cancer (n = 23), patients presenting with systemic metastases (n = 5), patients with malignancy other than the primary breast cancer (n = 3), patients who received neoadjuvant chemotherapy prior to MRI (n = 2), patients in whom MRI was performed after vacuum-assisted or excisional biopsy (n = 9), patients with occult breast cancer (n = 1), patients with unavailable pathological variables (n = 61), patients with bilateral breast cancer (n = 5), and patients who were immediately loss to follow-up after surgery (n = 5). Finally, 228 patients (mean age, 53 years; range, 22–85 years) were included in this study. For independent temporal validation, patients who underwent surgery up to April 2015 were assigned to the training set (n =  169, mean age, 52 years [range, 25–85 years]) and subsequent patients were assigned to the validation set (n = 59; mean age, 54 years [range, 22–81 years]).

Immunohistochemical Staining and Interpretation

Immunohistochemical staining for the ER, PR and HER2 status was performed on tissue slices with standard methods30,31. A cut-off value of ≥ 1% positively stained nuclei was used to define ER and PR positivity using the Envision FLEX Kit (DAKO, Glostrup, Denmark). HER2 staining using the Hercep Test TM (DAKO, Glostrup, Denmark) was scored as 0, 1+, 2+, or 3+ according to the American Society of Clinical Oncology (ASCO)/College of American Pathologists (CAP) guidelines31. HER2 immunostaining was considered positive when strong (3+) membranous staining was observed whereas cases with 0–1+ were regarded as negative. In cases with a HER2 2+ result, silver in situ hybridization (SISH) was performed using the INFORM HER2 Dual ISH DNA Probe Cocktail Assay (Ventana Medical Systems, Tucson, AZ) with an automated slide stainer according to the manufacturer’s protocols. HER2 gene amplification was defined with a HER2 gene/chromosome 17 copy number ratio ≥ 2.0 or a HER2 gene/chromosome 17 copy number ratio < 2.0 with an average HER2 copy number ≥ 6.0 signals/cell according to the ASCO/CAP guidelines.

Clinicopathologic evaluation and follow-up

Patient age, information on clinical follow-up and on treatment modalities including surgery, radiation therapy, and neoadjuvant or adjuvant chemotherapy were obtained from medical records. The final histopathological results of surgical specimens were reviewed to determine pathological T and N categories, histologic grade and lymphovascular invasion. Tumor size at initial preoperative MRI was obtained from the radiology report. The follow-up protocol for patients is described in the Supplementary Information.

The end point of our study was DFS, which was defined as the time interval from the date of surgery to development of the first evidence of events. Events for determining DFS were events of breast cancer recurrence (locoregional or distant recurrence) or the development of a new primary contralateral breast cancer.

MRI technique

MRI was performed with a 3 T scanner (Discovery MR750w; GE Healthcare, Milwaukee, WI, USA) with a dedicated phased array breast coil. All patients underwent MRI in the prone position. After obtaining three-plane localizer images, axial T2-weighted (T2W) fast spin-echo images (TR/TE, 4187/102; matrix, 320 × 256 pixels; field of view, 320 × 320 mm; section thickness, (3) and axial T2 STIR images (TR/TE, 5000/70; TI, 200 ms) were obtained. After obtaining axial diffusion-weighted images with a 2D spin-echo echo-planar imaging (EPI) sequence, a T1-weighted (T1W) dynamic contrast-enhanced (CE) sequence was performed. This included one precontrast acquisition and six postcontrast bilateral axial acquisitions (VIBRANT-Flex Dyn. imaging; matrix, 280 × 512 pixels; flip angle, 12 degrees; field of view, 320 × 320 mm; section thickness, 3 mm, no intersection gap) (Supplementary Information).

MRI preparation for radiomic feature analysis

Lesion segmentation and image preprocessing

One breast radiologist (V.Y.P, with 5 years of subspecialty experience in breast imaging) semiautomatically segmented the tumor lesion in early contrast-enhanced T1-weighted images using MIPAV software (Medical Imaging Processing Analysis & Visualization, National Institutes of Health, mipav.cit.nih.gov) and the generated mask was used for CE T1W and T2W images. To evaluate interobserver reproducibility, another breast radiologist (M.J.K, with 16 years of subspecialty experience in breast imaging) independently performed tumor segmentation on 40 randomly chosen lesions. Further details are given in the Supplementary Information.

Radiomic feature extraction

Radiomic feature extraction and additional image preprocessing were performed using open source PyRadiomics software (version 2.1.2; Computational Imaging and Bioinformatics Lab, Harvard Medical School)32. In this study, a total of 2436 candidate radiomic features were generated from the CE T1W and T2W images including features of shape, histogram, GLCM, GLRLM, GLSZM, GLDM with or without imaging filters (Laplacian of Gaussian, Wavelet). Details are presented in the Supplementary Information.

Statistical analysis

Patient characteristics were compared between the training and validation set using the Student’s t-test for continuous variables and the chi-squared test or Fisher’s exact test for categorical variables.

For feature selection, radiomic features with ICC values of less than 0.75 were removed. We then used the least absolute shrinkage and selection operator (LASSO) method using 10-fold cross validation, to select the most significant features in the training data set33. The LASSO is a data analysis method that is suitable for the regression of high-dimensional data. The selected imaging features were then combined into a radiomics score (Rad-score). For each patient, a Rad-score was calculated through a linear combination of selected features weighted by their respective coefficients.

We first assessed the potential association of the radiomics score with DFS in the training set, and then validated it in the validation set. Patients were classified into high-risk or low-risk groups according to the Rad-score, by the maximally selected log-rank statistic34 Kaplan-Meier curves were used to analyse DFS between the high-risk and low-risk groups, and log-rank tests were used to compare differences in survival. In addition, to determine clinicopathologic variables associated with DFS, we used the univariate Cox proportional hazards model to analyze the association between clinicopathologic variables in the whole data set (n = 228). Multivariate Cox regression was performed for variables with a p value of < 0.1 in the univariate Cox regression analysis.

In addition to the radiomics score (Rad-score-only model), we built a clinicopathologic model and a combined clinicopathologic-radiomics (CCR) model to evaluate the prognostic performance of all three models and demonstrate the value of the radiomics score. The CCR model incorporated the radiomics score and independent clinicopathologic risk factors based on the multivariate Cox analysis. The performance of the CCR model was compared with that of both the Rad-score-only model and clinicopathologic model in the training set and validation set, respectively. Model performance was calculated by using the integrated area under the time-dependent ROC curve (iAUC) based on predicted risks from each model (Supplementary Information).

The interobserver variability of the radiomic features was assessed with the intraclass correlation coefficient (ICC). An ICC value greater than 0.75 was considered to represent good reproducibility35. Changes in hazard ratio (HR) were calculated with a 0.1-unit difference in the Rad-score. All statistical and radiomic analyses were performed using the R software (version 3.3.1; R Foundation for Statistical Computing). A two-tailed p value of <0.05 was considered statistically significant.

Supplementary information

Acknowledgements

This study was supported by a Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2017R1D1A1B03035995), a Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education (NRF-2018R1D1A1B07048179), and a Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning, Republic of Korea (NRF-2017R1A2B4010407). The authors would like to thank Nak-Hoon Son, Ph.D. (Yonsei University, Yongin Severance Hospital), for his assistance and comments on statistical analyses.

Author contributions

S.W. – image post-processing, radiomic feature extraction/selection, statistical analysis, manuscript writing, M.J.K. – acquisition of imaging data, data collection, conceived and coordinated study activities, manuscript review, E.K. and J.H.Y. – acquisition of imaging data and manuscript review, V.Y.P. – acquisition of manuscript data, data collection, manuscript writing, coordinated, and directed all study activities. All authors read and approved the manuscript.

Data availability

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

Competing interests

The authors declare no competing interests.

Footnotes

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

is available for this paper at 10.1038/s41598-020-60822-9.

References

  • 1.Comprehensive molecular portraits of human breast tumours. Nature490, 61–70, 10.1038/nature11412 (2012). [DOI] [PMC free article] [PubMed]
  • 2.Perou CM, et al. Molecular portraits of human breast tumours. Nat. 2000;406:747–752. doi: 10.1038/35021093. [DOI] [PubMed] [Google Scholar]
  • 3.Parker JS, et al. Supervised risk predictor of breast cancer based on intrinsic subtypes. J. Clin. Oncol. 2009;27:1160–1167. doi: 10.1200/jco.2008.18.1370. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Coates AS, et al. Tailoring therapies–improving the management of early breast cancer: St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2015. Ann. Oncol. 2015;26:1533–1546. doi: 10.1093/annonc/mdv221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Arteaga CL, et al. Treatment of HER2-positive breast cancer: current status and future perspectives. Nat. Rev. Clin. Oncol. 2011;9:16–32. doi: 10.1038/nrclinonc.2011.177. [DOI] [PubMed] [Google Scholar]
  • 6.Dent R, et al. Triple-negative breast cancer: clinical features and patterns of recurrence. Clin. Cancer Res. 2007;13:4429–4434. doi: 10.1158/1078-0432.Ccr-06-3045. [DOI] [PubMed] [Google Scholar]
  • 7.Bae MS, et al. Pretreatment MR Imaging Features of Triple-Negative Breast Cancer: Association with Response to Neoadjuvant Chemotherapy and Recurrence-Free Survival. Radiology. 2016;281:392–400. doi: 10.1148/radiol.2016152331. [DOI] [PubMed] [Google Scholar]
  • 8.Song SE, et al. MR imaging features associated with distant metastasis-free survival of patients with invasive breast cancer: a case-control study. Breast Cancer Res. Treat. 2017;162:559–569. doi: 10.1007/s10549-017-4143-6. [DOI] [PubMed] [Google Scholar]
  • 9.Lehmann BD, et al. Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies. J. Clin. Invest. 2011;121:2750–2767. doi: 10.1172/jci45014. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Loi S, et al. Tumor-Infiltrating Lymphocytes and Prognosis: A Pooled Individual Patient Analysis of Early-Stage Triple-Negative Breast Cancers. J. Clin. Oncol. 2019;37:559–569. doi: 10.1200/jco.18.01010. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Yip SS, Aerts HJ. Applications and limitations of radiomics. Phys. Med. Biol. 2016;61:R150–166. doi: 10.1088/0031-9155/61/13/r150. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Park H, et al. Radiomics Signature on Magnetic Resonance Imaging: Association with Disease-Free Survival in Patients with Invasive Breast Cancer. Clin. Cancer Res. 2018;24:4705–4714. doi: 10.1158/1078-0432.Ccr-17-3783. [DOI] [PubMed] [Google Scholar]
  • 13.Youk JH, Son EJ, Chung J, Kim JA, Kim EK. Triple-negative invasive breast cancer on dynamic contrast-enhanced and diffusion-weighted MR imaging: comparison with other breast cancer subtypes. Eur. Radiol. 2012;22:1724–1734. doi: 10.1007/s00330-012-2425-2. [DOI] [PubMed] [Google Scholar]
  • 14.Sung JS, et al. MR imaging features of triple-negative breast cancers. Breast J. 2013;19:643–649. doi: 10.1111/tbj.12182. [DOI] [PubMed] [Google Scholar]
  • 15.Dong Y, et al. Preoperative prediction of sentinel lymph node metastasis in breast cancer based on radiomics of T2-weighted fat-suppression and diffusion-weighted MRI. Eur. Radiol. 2018;28:582–591. doi: 10.1007/s00330-017-5005-7. [DOI] [PubMed] [Google Scholar]
  • 16.Liang C, et al. An MRI-based Radiomics Classifier for Preoperative Prediction of Ki-67 Status in Breast Cancer. Acad. Radiol. 2018;25:1111–1117. doi: 10.1016/j.acra.2018.01.006. [DOI] [PubMed] [Google Scholar]
  • 17.Chai R, et al. Differentiating axillary lymph node metastasis in invasive breast cancer patients: A comparison of radiomic signatures from multiparametric breast MR sequences. J. Magn. Reson. Imaging. 2019;50:1125–1132. doi: 10.1002/jmri.26701. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Gibbs P, et al. Characterization of Sub-1 cm Breast Lesions Using Radiomics Analysis. J. Magn. Reson. Imaging. 2019 doi: 10.1002/jmri.26732. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Leithner D, et al. Radiomic signatures with contrast-enhanced magnetic resonance imaging for the assessment of breast cancer receptor status and molecular subtypes: initial results. Breast Cancer Res. 2019;21:106. doi: 10.1186/s13058-019-1187-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Liu C, et al. Preoperative prediction of sentinel lymph node metastasis in breast cancer by radiomic signatures from dynamic contrast-enhanced MRI. J. Magn. Reson. Imaging. 2019;49:131–140. doi: 10.1002/jmri.26224. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Liu Z, et al. Radiomics of Multiparametric MRI for Pretreatment Prediction of Pathologic Complete Response to Neoadjuvant Chemotherapy in Breast Cancer: A Multicenter Study. Clin. Cancer Res. 2019;25:3538–3547. doi: 10.1158/1078-0432.Ccr-18-3190. [DOI] [PubMed] [Google Scholar]
  • 22.Truhn D, et al. Radiomic versus Convolutional Neural Networks Analysis for Classification of Contrast-enhancing Lesions at Multiparametric Breast MRI. Radiology. 2019;290:290–297. doi: 10.1148/radiol.2018181352. [DOI] [PubMed] [Google Scholar]
  • 23.Wang J, et al. Identifying Triple-Negative Breast Cancer Using Background Parenchymal Enhancement Heterogeneity on Dynamic Contrast-Enhanced MRI: A Pilot Radiomics Study. PLoS One. 2015;10:e0143308. doi: 10.1371/journal.pone.0143308. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Kim JH, et al. Breast Cancer Heterogeneity: MR Imaging Texture Analysis and Survival Outcomes. Radiology. 2017;282:665–675. doi: 10.1148/radiol.2016160261. [DOI] [PubMed] [Google Scholar]
  • 25.Inwald EC, et al. Ki-67 is a prognostic parameter in breast cancer patients: results of a large population-based cohort of a cancer registry. Breast Cancer Res. Treat. 2013;139:539–552. doi: 10.1007/s10549-013-2560-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Schmitz AM, Loo CE, Wesseling J, Pijnappel RM, Gilhuijs KG. Association between rim enhancement of breast cancer on dynamic contrast-enhanced MRI and patient outcome: impact of subtype. Breast Cancer Res. Treat. 2014;148:541–551. doi: 10.1007/s10549-014-3170-9. [DOI] [PubMed] [Google Scholar]
  • 27.Yam C, Mani SA, Moulder SL. Targeting the Molecular Subtypes of Triple Negative Breast Cancer: Understanding the Diversity to Progress the Field. Oncologist. 2017;22:1086–1093. doi: 10.1634/theoncologist.2017-0095. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Liedtke C, et al. The prognostic impact of age in patients with triple-negative breast cancer. Breast Cancer Res. Treat. 2013;138:591–599. doi: 10.1007/s10549-013-2461-x. [DOI] [PubMed] [Google Scholar]
  • 29.Park VY, Kim EK, Kim MJ, Yoon JH, Moon HJ. Perfusion Parameters on Breast Dynamic Contrast-Enhanced MRI Are Associated With Disease-Specific Survival in Patients With Triple-Negative Breast Cancer. AJR Am. J. Roentgenol. 2017;208:687–694. doi: 10.2214/ajr.16.16476. [DOI] [PubMed] [Google Scholar]
  • 30.Hammond ME, et al. American Society of Clinical Oncology/College Of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer. J. Clin. Oncol. 2010;28:2784–2795. doi: 10.1200/jco.2009.25.6529. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31.Wolff AC, et al. Recommendations for human epidermal growth factor receptor 2 testing in breast cancer: American Society of Clinical Oncology/College of American Pathologists clinical practice guideline update. J. Clin. Oncol. 2013;31:3997–4013. doi: 10.1200/jco.2013.50.9984. [DOI] [PubMed] [Google Scholar]
  • 32.van Griethuysen JJM, et al. Computational Radiomics System to Decode the Radiographic Phenotype. Cancer Res. 2017;77:e104–e107. doi: 10.1158/0008-5472.Can-17-0339. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33.Tibshirani R. The lasso method for variable selection in the Cox model. Stat. Med. 1997;16:385–395. doi: 10.1002/(SICI)1097-0258(19970228)16:4&#x0003c;385::AID-SIM380&#x0003e;3.0.CO;2-3. [DOI] [PubMed] [Google Scholar]
  • 34.Contal C, O’Quigley J. An application of changepoint methods in studying the effect of age on survival in breast cancer. Computational Stat. Data Anal. 1999;30:253–270. doi: 10.1016/S0167-9473(98)00096-6. [DOI] [Google Scholar]
  • 35.Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics. 1977;33:159–174. doi: 10.2307/2529310. [DOI] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Data Availability Statement

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.


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