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. 2020 Feb 28;10:3686. doi: 10.1038/s41598-020-60320-y

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The 29 C. coli with at least 10% C. jejuni genome content are not related and isolated from different locations and at distinct timepoints. Minimum spanning tree of cgMLST analysis, based on 1343 core genes defined previously²². Circles represent C. coli isolates; numbers illustrate allele differences between nearest neighbours; isolation matrix is indicated as text; colour code for MLST ST-type as depicted in the legend. Unknown, new ST-type; no group assigned, at least one allele of the 7 housekeeping genes is new. New alleles and ST-types were submitted to PuMLST and numbers are shown in Supplementary Table S1.