Table S2. Genes with >4-fold upregulated expression in SD or PD tissue compared to PR tissue.
| Gene symbol | FPKM (mean ± SD) | Mean fold change (SD or PD/PR, ± SD) | P valuea | |
|---|---|---|---|---|
| SD or PD | PR | |||
| AL359475.1 | 1.87±0.61 | 0.63±0.44 | 17.26±0.94 | 3.95×10−28 |
| HOXA-AS3 | 1.14±1.32 | 0.15±0.16 | 9.88±1.33 | 2.56×10−10 |
| AC005307.1 | 1.34±0.65 | 0.42±0.65 | 8.26±0.92 | 4.06×10−13 |
| CASC9 | 1.33±1.07 | 0.49±0.38 | 7.02±1.14 | 3.37×10−11 |
| AC010776.2 | 1.29±1.38 | 0.49±0.37 | 6.32±1.43 | 2.13×10−7 |
| KCNQ5-IT1 | 0.92±0.90 | 0.14±0.16 | 6.05±0.91 | 7.34×10−13 |
| AC104463.2 | 1.12±0.80 | 0.36±0.32 | 5.79±0.86 | 1.19×10−13 |
| KEGG | 0.86±0.93 | 0.10±0.15 | 5.75±0.94 | 6.41×10−12 |
| AC010776.2 | 0.90±0.62 | 0.18±0.21 | 5.28±0.65 | 5.03×10−17 |
| AC005609.1 | 0.80±0.51 | 0.09±0.13 | 5.06±0.53 | 4.24×10−20 |
| HIF1A-AS2 | 1.03±0.79 | 0.32±0.31 | 5.01±0.85 | 2.83×10−12 |
| AC012414.5 | 0.83±0.63 | 0.13±0.10 | 5.01±0.63 | 4.43×10−17 |
| AP001993.1 | 1.00±0.81 | 0.30±0.25 | 4.98±0.85 | 2.79×10−12 |
| AL031772.1 | 1.06±0.47 | 0.37±0.28 | 4.94±0.55 | 6.62×10−20 |
| ERVMER61-1 | 1.21±0.66 | 0.52±0.36 | 4.90±0.76 | 1.03×10−13 |
| AL162464.2 | 0.91±0.43 | 0.24±0.18 | 4.78±0.47 | 1.10×10−21 |
| AC078789.1 | 0.86±0.67 | 0.19±0.22 | 4.75±0.70 | 3.99×10−15 |
| AC005062.1 | 1.17±0.61 | 0.49±0.21 | 4.72±0.64 | 1.47×10−16 |
| AC005609.3 | 0.84±0.93 | 0.18±0.15 | 4.57±0.94 | 3.00×10−9 |
| PSPC1-AS2 | 0.73±0.59 | 0.08±0.26 | 4.46±0.64 | 2.49×10−15 |
| AC007223.1 | 0.68±0.86 | 0.03±0.08 | 4.44±0.87 | 1.54×10−10 |
| AC108734.4 | 0.74±0.56 | 0.10±0.17 | 4.43±0.58 | 4.49×10−17 |
| AC121338.2 | 0.82±0.88 | 0.18±0.14 | 4.28±0.89 | 9.16×10−10 |
| LINC01305 | 1.75±0.57 | 1.12±0.35 | 4.27±0.66 | 6.39×10−16 |
| AC011825.2 | 1.08±0.58 | 0.45±0.17 | 4.23±0.60 | 2.35×10−15 |
a, P values were calculated by the paired t-test. FPKM, fragments per kilobase of exon per million fragments mapped; SD, standard deviation; PR, partial response, PD, progressive disease; SD, stable disease.