Table 2. Sequencing sample data output and quality evaluation statistics.
| Sample | PE_reads | Q20 (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|
| Sample (VD) | ||||
| A101kou | 7702 | 97.66 | 95.89 | 51.99 |
| A101zhong | 137219 | 97.73 | 96.03 | 52.48 |
| A102kou | 129313 | 97.88 | 96.25 | 54.06 |
| A102zhong | 158034 | 97.87 | 96.20 | 53.62 |
| A103kou | 147018 | 97.90 | 96.33 | 53.48 |
| A103zhong | 137450 | 97.78 | 96.12 | 53.55 |
| A104kou | 144249 | 97.33 | 95.71 | 53.24 |
| A104zhong | 164513 | 97.69 | 96.09 | 53.66 |
| A105kou | 165721 | 96.78 | 95.12 | 52.15 |
| A105zhong | 122235 | 97.71 | 96.09 | 51.85 |
| A55kou | 135442 | 97.56 | 95.90 | 51.66 |
| A55zhong | 118568 | 97.77 | 96.08 | 50.83 |
| A56kou | 159992 | 96.29 | 94.62 | 51.86 |
| A56zhong | 149826 | 97.66 | 96.00 | 52.42 |
| A57kou | 138006 | 97.81 | 96.25 | 51.85 |
| A57zhong | 139832 | 97.76 | 96.15 | 52.04 |
| A59kou | 147775 | 97.85 | 96.25 | 52.06 |
| A59zhong | 135591 | 97.71 | 96.09 | 51.97 |
| A62kou | 144575 | 97.75 | 96.15 | 52.25 |
| A62zhong | 124962 | 97.88 | 96.26 | 51.82 |
| A63kou | 148910 | 97.85 | 96.28 | 51.97 |
| A63zhong | 127930 | 96.90 | 95.26 | 51.82 |
| A65kou | 140301 | 97.43 | 95.86 | 51.85 |
| A65zhong | 136975 | 97.88 | 96.29 | 52.00 |
| A67kou | 190662 | 97.38 | 95.84 | 52.56 |
| A67zhong | 180826 | 93.56 | 91.86 | 51.88 |
| A68kou | 146383 | 97.73 | 96.17 | 52.39 |
| A68zhong | 137618 | 97.87 | 96.30 | 52.06 |
| A74kou | 162131 | 97.02 | 95.37 | 52.45 |
| A74zhong | 139848 | 97.48 | 95.84 | 52.19 |
| A75kou | 219948 | 90.84 | 88.99 | 51.31 |
| A75zhong | 151254 | 97.83 | 96.22 | 52.13 |
| A77kou | 163859 | 97.35 | 95.79 | 51.97 |
| A77zhong | 149796 | 97.64 | 96.09 | 52.25 |
| A78kou | 153324 | 97.76 | 96.15 | 52.23 |
| A78zhong | 146487 | 97.81 | 96.18 | 52.01 |
| A82kou | 145602 | 97.74 | 96.15 | 52.06 |
| A82zhong | 166547 | 97.01 | 95.36 | 52.14 |
| A84kou | 152770 | 97.56 | 95.94 | 52.31 |
| A84zhong | 153188 | 98.01 | 96.46 | 52.19 |
| A85kou | 151276 | 97.99 | 96.48 | 52.16 |
| A85zhong | 150678 | 97.68 | 96.06 | 52.35 |
| A86kou | 168598 | 97.40 | 95.81 | 52.35 |
| A86zhong | 178303 | 97.71 | 96.09 | 51.81 |
| A88kou | 163560 | 97.82 | 96.21 | 53.23 |
| A88zhong | 142423 | 97.77 | 96.13 | 53.22 |
| A89kou | 142954 | 97.30 | 95.68 | 52.13 |
| A89zhong | 150183 | 97.80 | 96.15 | 51.65 |
| A90kou | 133372 | 97.63 | 95.97 | 52.20 |
| A90zhong | 179171 | 97.77 | 96.11 | 52.52 |
| A92kou | 170181 | 97.34 | 95.74 | 52.44 |
| A92zhong | 160550 | 97.84 | 96.19 | 52.04 |
| A95kou | 89529 | 97.33 | 95.71 | 53.15 |
| A95zhong | 137312 | 96.80 | 95.14 | 51.98 |
| A96kou | 170898 | 97.51 | 95.90 | 52.19 |
| A96zhong | 147055 | 97.93 | 96.36 | 51.92 |
| A97kou | 145110 | 97.80 | 96.15 | 52.36 |
| A97zhong | 134741 | 97.87 | 96.19 | 52.65 |
| A98kou | 176908 | 97.61 | 96.05 | 52.71 |
| A98zhong | 138250 | 97.86 | 96.23 | 52.57 |
| Sample (CD) | ||||
| B45kou | 164485 | 91.62 | 89.74 | 50.67 |
| B45zhong | 106021 | 97.15 | 95.44 | 52.14 |
| B46kou | 158701 | 95.22 | 93.53 | 51.15 |
| B46zhong | 152103 | 96.23 | 94.57 | 52.07 |
| B47kou | 196685 | 94.39 | 92.70 | 52.07 |
| B47zhong | 184698 | 91.86 | 90.05 | 51.79 |
| B48kou | 175716 | 91.76 | 89.95 | 51.50 |
| B48zhong | 137551 | 92.64 | 90.93 | 52.22 |
| B50kou | 142384 | 94.40 | 92.65 | 51.91 |
| B50zhong | 139164 | 93.14 | 91.36 | 51.38 |
| B51kou | 144403 | 96.19 | 94.63 | 49.57 |
| B51zhong | 121438 | 97.86 | 96.29 | 49.11 |
| B53kou | 174179 | 84.30 | 81.95 | 50.05 |
| B53zhong | 122428 | 93.59 | 91.86 | 51.52 |
| B54kou | 182883 | 94.45 | 92.76 | 51.91 |
| B54zhong | 158752 | 92.72 | 90.99 | 51.09 |
| B55kou | 165246 | 96.89 | 95.26 | 53.00 |
| B55zhong | 133782 | 97.77 | 96.20 | 53.35 |
| B58kou | 140464 | 94.06 | 92.32 | 52.29 |
| B58zhong | 159405 | 96.00 | 94.37 | 53.23 |
| B59kou | 172022 | 95.80 | 94.15 | 52.16 |
| B59zhong | 139824 | 95.67 | 94.03 | 51.87 |
| B60kou | 158457 | 93.91 | 92.25 | 51.89 |
| B60zhong | 136713 | 95.88 | 94.31 | 51.70 |
| B62kou | 143449 | 93.70 | 91.95 | 51.94 |
| B62zhong | 165476 | 94.18 | 92.43 | 51.86 |
| B63kou | 135867 | 95.00 | 93.34 | 51.52 |
| B63zhong | 158737 | 96.24 | 94.60 | 51.03 |
| B64kou | 174318 | 95.00 | 93.27 | 52.07 |
| B64zhong | 142343 | 95.13 | 93.43 | 52.01 |
| B65kou | 185074 | 90.67 | 88.80 | 51.14 |
| B65zhong | 146121 | 93.47 | 91.63 | 51.90 |
| B66kou | 174426 | 93.47 | 91.75 | 51.75 |
| B66zhong | 203522 | 92.99 | 91.22 | 51.39 |
| B67kou | 181635 | 92.17 | 90.38 | 51.42 |
| B67zhong | 122453 | 97.03 | 95.43 | 52.32 |
| B68kou | 141852 | 94.35 | 92.65 | 51.83 |
| B68zhong | 139997 | 94.76 | 93.07 | 51.80 |
| B69kou | 144565 | 87.20 | 85.12 | 51.02 |
| B69zhong | 232848 | 86.72 | 84.62 | 50.57 |
| B70kou | 101082 | 96.37 | 94.77 | 52.70 |
| B70zhong | 162161 | 97.73 | 96.12 | 52.92 |
| B71kou | 150398 | 91.81 | 90.01 | 51.31 |
| B71zhong | 123454 | 95.50 | 93.78 | 51.09 |
| B72kou | 161306 | 96.11 | 94.47 | 51.73 |
| B72zhong | 153212 | 96.97 | 95.37 | 51.75 |
| B73kou | 188604 | 91.29 | 89.43 | 51.17 |
| B73zhong | 165029 | 84.44 | 82.28 | 50.15 |
| B74kou | 179825 | 96.50 | 94.99 | 52.05 |
| B74zhong | 326549 | 83.51 | 81.04 | 49.50 |
| B75kou | 128424 | 96.36 | 94.75 | 52.17 |
| B75zhong | 168641 | 96.71 | 95.06 | 52.20 |
| B76kou | 188426 | 89.99 | 88.11 | 51.40 |
| B76zhong | 131517 | 97.40 | 95.77 | 52.65 |
| B77kou | 174054 | 88.58 | 86.67 | 50.70 |
| B77zhong | 108945 | 92.95 | 91.21 | 51.22 |
| B78kou | 164436 | 93.73 | 91.99 | 51.43 |
| B78zhong | 141726 | 95.54 | 93.62 | 51.84 |
| B79kou | 186324 | 90.85 | 88.99 | 51.55 |
| B79zhong | 166931 | 88.20 | 86.19 | 50.97 |