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. 2020 Feb 28;4(1):016104. doi: 10.1063/1.5134926

TABLE I.

Model parameters.

Parameter Variable Value Source
Average run duration in the absence of a chemoeffector gradient τ0 0.86 s 63
Average tumble duration τT 0.14 s 63
Chemotactic sensitivity for l-aspartic acid σchemoCT 35 s Estimated
Dissociation constant for l-aspartic acid Kd 18 μM Estimated
Bacteria swimming speed Vb 34 μm/s Measured
Mean change in bacteria bearing between successive run phases θμ 68° 63
Standard deviation of bacteria bearing change between run phases θσ 36° 63
Basal QS signal (AHL) generation rate A1 3.19 molecules/s Fitted
Upregulated QS signal (AHL) generation rate A2 234 molecules /s Fitted
Hill constant H 2.5 65
QS signal (AHL) upregulation threshold Q0 1.87 nM Fitted
Rate of GFP translation ktr 4.0 × 10−1 molecules/s Fitted
Rate of GFP maturation kGm 3.02 × 10−3 s−1 Estimated69
Maximum rate of GFP degradation kdeg 5.54 molecules/s Estimated70,71
Half-maximum concentration for GFP degradation Km 6650 molecules/cell Estimated70
Diffusion coefficient of the QS signaling molecule (AHL) in water Dsignal 490 μm2/s 72
Rate of QS signal (AHL) degradation Rd 10.8% h−1 73