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. 2020 Jan 27;39(5):e102622. doi: 10.15252/embj.2019102622

Figure EV2. NMR structural analysis using residual dipolar couplings (RDCs).

Figure EV2

  • A, B
    15N‐1H HSQC‐IPAP spectra (Tjandra & Bax, 1997) of 15N‐labeled α‐actinin‐1_EF34 (A) or apoCaM (B) in the presence of saturating unlabeled IQ peptide. Representative and measured RDC values are marked above‐selected peaks. Samples used in HSQC‐IPAP experiments were prepared by adding 5 mg of 15N‐labeled protein to 0.5 ml of NMR buffer containing 12 mg/ml of filamentous bacteriophage Pf1. HSQC‐IPAP spectra were recorded in the presence of Pf1 (A, B) and absence of Pf1 (not shown). Residual dipolar couplings (RDCs) were measured (in Hz) as the difference in splitting for the 15N‐[1H] doublet components relative to the isotropic 1JNH coupling. RDCs measured for 34 residues (α‐actinin‐1_EF34/IQ) and 36 residues (apoCaM/IQ) served as orientational structural restraints applied during the refinement phase of the structure calculation (Schwieters et al, 2003).
  • C, D
    Plots showing the correlation between observed versus calculated backbone RDCs predicted from the final NMR‐derived structures for α‐actinin‐1_EF34/IQ and apoCaM/IQ, respectively. The correlation coefficient (r 2) equals 0.99, and Q is 0.095 and 0.089 for α‐actinin‐1_EF34/IQ and apoCaM/IQ, respectively.