Table 2:
Statistics of transposable elements in Aquilaria sinensis genome sequences
| Type | Repbase TEs | Mips-REdat TEs | TE proteins | RepeatModeler | Combined TEs | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Length (Mb) | % in genome | Length (Mb) | % in genome | Length (Mb) | % in genome | Length (Mb) | % in genome | Length (Mb) | % in genome | |
| DNA | 13,223,408 | 1.84 | 1,392,136 | 0.19 | 10,456,270 | 1.45 | 28,698 131 | 3.98 | 38,895,471 | 5.4 |
| LINE | 2,916,904 | 0.41 | 253,492 | 0.04 | 7,680,548 | 1.07 | 6,394,899 | 0.89 | 12,239,695 | 1.7 |
| LTR | 73,748,923 | 10.24 | 22,973,865 | 3.19 | 75,336,839 | 10.46 | 138,348,032 | 19.21 | 192,609,862 | 26.74 |
| SINE | 2,232 | 0 | 1,145 | 0 | 0 | 0 | 0 | 0 | 4,539 | 0 |
| Other | 6,189,190 | 0.86 | 380,555 | 0.05 | 1,369,337 | 0.19 | 0 | 0 | 87,659,087 | 12.17 |
| Unknown | 35,443 | 0 | 0 | 0 | 0 | 0 | 124,331,790 | 17.26 | 94,460,416 | 13.12 |
| Total | 96,116,100 | 13.35 | 25,001,193 | 3.47 | 94,842,994 | 13.17 | 296,679,047 | 41.19 | 425,869,070 | 59.13 |