. Author manuscript; available in PMC: 2021 Mar 1.

Published in final edited form as: Mol Ecol Resour. 2020 Jan 27;20(2):531–543. doi: 10.1111/1755-0998.13133

Table 2. Yellow perch annotation statistics.

Genome annotation metrics were taken from our own yellow perch genome annotation (current study) and from the National Center for Biotechnology Information (NCBI) genome annotation [NCBI Perca flavescens Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Perca_flavescens/100/)]. Genome annotation gene completeness was assessed using BUSCO based on the Actinopterygii database.

Gene annotation	Current study	NCBI
Number of genes	24,486	28,144
Number of mRNA	21,723	42,926
Number of tRNA	2,763	1,250
Transcriptome size	56,137,542 bp	138,437,341 bp
Mean transcript length	2,292 bp	2,938 bp
Longest transcript	67,783 bp	94,494 bp
Number of coding genes with significant hit against NCBI NR	16,579 (76.3%)	20,992 (88,4%)
Gene completeness (Actinopterygii dataset)
Complete BUSCOs	4,287 (93.5%)	4,555 (99.4%)
Fragmented BUSCOs	87 (1.9%)	18 (0.4%)
Missing BUSCOs	210 (4.6%)	11 (0.2%)