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. 2020 Mar 2;21:193. doi: 10.1186/s12864-020-6568-2

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© The Author(s). 2020

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Workflow of the web application. The interface layer of the web application is partitioned into 3 sections: comparing reference genomes, analyzing genome assembly and analyzing gene structure annotations (green). Each of these sections has an input widget panel for file uploads and parameter selection (green). The input parameters and the uploaded data files are then analyzed for contiguity, gene space and repeat space completeness, and contamination check (blue) using bash, R and python scripts (blue) and the different metrics and plots are displayed through the output tabs (yellow)