Table 2.

Differentially expressed lncRNAs and mRNAs of merged dataset.

lncRNAs	Upregulated	MNX1-AS1, FEZF1-AS1, CLDN10-AS1, LINC00511, LINC01635, LINC02544, LINC02362, AC105760, AC100861, LINC02483, AC108134, AL391056, CASC9, LINC01876
	Downregulated	PICSAR, AC007743, MIR3945HG, MIR99AHG, AC007405, NFIA-AS2, LINC00987, AC046195, LINC00968, COLCA1, LINC00636, PTPRD-AS1, LINC01197, HHIP-AS1, LHFPL3-AS2, SMIM25, PCAT19, ADAMTS9-AS2, TBX5-AS1, TARID, AC008268, RAMP2-AS1, FENDRR, AC245041, SRGAP3-AS2, LINC01936, SFTA1P
mRNAs	Upregulated	FAM83A, MMP12, ANLN, TOP2A, CTHRC1, TPX2, CST2, ASPM, SLC2A1, KIF20A, UBE2C, CDCA2, KIF4A, KIF2C, DNAJC22, BUB1, PITX1, RRM2, CCNB2, CKAP2L, E2F8, MCM10, CDC20, KIF14, UHRF1, TTK, DLGAP5, CDCA7, PLPP2, SAPCD2, CP, LGSN, FOXM1, KRT80, CLSPN, MMP11, CDK1, CDKN3, TOX3, SCG5, SULF1, HMMR, NUF2, KIF11, CDC25C, NDC80, SLC22A18AS, SPP1, CHEK1, CENPA, GPT2, PRAME, TK1, GALNT14, CCNA2, IGFL2, CENPU, FAP, STIL, SLC44A5, ARHGEF39, MAP7D2, CCNO, ESPL1, COL3A1, RAD51AP1, SGPP2, CCNE1, GPX2, OCIAD2, SEMA4B, E2F7, KIF15, AUNIP, ARNTL2, SYT12, RAB26, EZH2, LMNB1, SPC24, ATP10B, AGMAT, PLK1, PLOD2, RECQL4, FAM72A, CDKN2A, FERMT1, EGLN3, SERINC2, AGR2, BRIP1, FGF11, TFAP2A, ZWINT, S100P, CENPF, PI15, MCM4, GALNT6, HELLS, MB, ORC6, CELSR3, LY6K, ATAD2, RALGPS2, CYP27B1, SLC2A5, STYK1, GTSE1, MMP13, RHOV, POLE2, RNF183, RHBDL2, ITPKA, TMEM45B, SGO2, ONECUT1, PRSS3, KNL1, KCNN4, GYG2, ABCC3, TIMELESS, ECT2, XRCC2, EPCAM, DSG2, JPT1, FANCI, GRHL1, DEPDC1, BPIFA2, CIT, FAM83B, GPC2, LOXL2, CEACAM1, PARPBP, GALNT7, CHGB, WDR62, FHL2, HIST1H2BE, CENPM, VWDE, TRIM31, AKR1B10, SFXN1, HILPDA, MYBL2, HIST1H2BI, FGL1, SLC16A14, MELTF, CXCL9, UGT8, AK4, STK32A, ADGRF1, NGEF, TFR2, KIF18A, HNF4G, PFKP, MZB1, UCHL1, ADAMTS16, RACGAP1, SLC17A9, CD19, P4HA3, ETV4, TNS4, TTYH3, SLFN13, STRA6, CARD14, CDCA8, CKS1B, FAM83D, CHI3L1, TNFRSF21, HIST1H2BC, FOXP3, CCDC34, FBXO32, GLYATL1, GSDMB, ESRP1, ARHGEF16, GAD1, SRPK1, TEX11, SLC7A5, HIST1H3H, TDRD5, FAM83F, FANCA, IL4I1, IGSF9, ESCO2, PPAT, HCN4, HIST1H2BG, KIF26B, MYO19, BICDL1, TDO2, CNTNAP5, BAIAP2L1, CPNE4, SLC12A8, LGI2, POC1A, LARGE2, RCC1, KIF18B, C12orf56, ZBED6CL, DBNDD1, CDC7, SYNJ2, NLN, FCN2, NECTIN4, LSR, CA12, MFAP2, UNC5CL, PTGES, BRCA1, PROM2, CGREF1, VTCN1, MTNR1A, SLC35F2, COL22A1, HNF4A, ERO1A, GSDMC, VCAN, PDCD2L, BZW2, KRTCAP3, AKR1B15, DTL, NCAPG2, SMKR1, PRSS1, SERPINB5, SHMT2, CPXM1, CHEK2, MCIDAS, EEF1AKMT4, GPR87, TONSL, GRHL2, SLC50A1, KCNQ5, CNTNAP2, C1orf53, BPIFB6, PRR19, PRR11, POSTN, KCNK1, MCM7, CIP2A, HIST3H2A, GAPDH, TUBB2B, BCO1, SUSD4, MTBP, LRRC59, STRIP2, PTHLH, PPIF, CLDN4, RNFT2, SYT7, SSR4, E2F1, VIL1, FCRL2, KIF22, BRDT, RNF43, TPD52, AOC1, JPT2, CDH1, DIRAS1, SCIN, TIGIT, PMAIP1, B3GNT5, MYEOV, VPREB3, P3H4, KLK6, BRI3BP, SLC39A11
	downregulated	SLC25A27, FAM184A, ZNF106, TJP1, TEKT2, PCYT1B, ITPRIP, EDIL3, GFOD1, SFTA3, TTLL10, AMIGO1, MT1E, SMIM10, LONRF1, PROK2, CFAP157, PODXLRSPO3, ELMO1, KLHDC1, SHROOM4, SMAD6, GPR146, SULT1A2, RASGRF1, NPR3, CD55, MACF1, TTLL11, MATN2, MRAS, ZNF608, PPP1R14C, RND3, IER2, DCN, PTPRG, TAL1, SLC2A3, FRAS1, PIFO, AMOTL2, MAP6, SFRP5, PLA1A, SLC27A3, ARHGAP20, RAB11FIP1, COBL, GNG7, TCF4, SLCO1A2, USP2, MAP7D3, SIRPB1, SORBS3, BMX, MYLK, DUOXA1, CNGA4, CACHD1, C1orf194, RASSF2, EFCAB12, SECISBP2L, SNRK, RGS22, SYNPO2, PTPRN2, ITGA10, NHSL1, HOXA4, CCL3, RAB11A, BMP6, PHLDB2, MYOCD, TSLP, MFSD2A, CADM1, GALNT16, VIM, MVB12B, TFPI, ADGRG6, CLEC12A, NXF3, ADPRH, ERG, GCOM1, KANK3, C1orf189, VSIR, SLC9A3R2, WNT11, HGF, LMO7, CES4A, PNPLA6, SPEF1, C1orf198, CST6, ABLIM1, PRICKLE2, ID2, PKNOX2, RPS6KA2, EFHB, SLC18A2, APOLD1, SPI1, ACACB, ID3, ADAMTS15, ECM2, SYNDIG1L, ELF5, DCDC2, HYAL2, HACD4, CD300LG, RBP7, TLL1, FAT4, BMPR2, GMFG, TMEM130, CCDC68, SIGLEC6, DRC3, SOX5, ARAP3, TSPAN19, JPH2, SYDE2, MYRIP, THSD4, CSRP1, FILIP1, VWA3A, LAMA4, SCTR, SPATA4, LBH, PTPN13, LAMA3, DISP1, HMGCLL1, ABHD6, STARD9, DENND3, NCALD, WNT2B, NFASC, MAPK4, DTHD1, ESYT3, NEXN, DNAJB4, TMEM139, ACOXL, ST6GALNAC3, MAP2, MCC, ATOH8, AKAP12, NEBL, CAV1, ZEB1, CLDN5, EPB41L2, RECK, TRPC6, TTLL7, SERTAD1, ANGPT1, SLC14A1, PYGM, CYB5A, IGSF22, DOCK4, SESN1, DGKG, SELENBP1, TUBB6, C1orf162, NLRC4, MSR1, NKD2, ALDH1A2, MEIS1, ETS2, PHACTR1, PRDM6, TSPAN18, AC023509, ADCY4, STAC, CDH19, JCAD, SERPINA1, SOBP, FLRT3, MAL, COLEC12, PIK3R1, IQCN, FEZ1, CASS4, NAPSA, NAV3, PLXNA2, NDRG4, CLDN18, RGS9, MSLN, FGR, EML1, RASGEF1B, PLCE1, RBMS2, NIM1K, SH3D19, METTL7A, RUNX1T1, LRRN4, PIGR, CALCOCO1, C14orf132, KL, SCEL, C16orf89, CFAP43, PDZRN3, FRMD3, CTSG, KLF6, GATA2, NR4A1, FGFR2, GIMAP1, CRIM1, C9orf24, FLI1, MGP, CXCL12, MFAP5, DNAAF1, PGM5, AATK, WFS1, SGIP1, HYAL1, SOX13, WNT7A, STARD13, NFIX, KCNK17, MDH1B, ROS1, ADGRE1, GATA6, DMD, ART4, USHBP1, SEMA6A, CA1, ADGRL2, CTXND1, TACC1, FAT3, SEMA6D, CPED1, ABCG2, IL7R, CD34, ARHGAP6, HECW2, ITLN1, ENG, DKK2, PRKG1, LRRC36, CHST9, SEMA3D, CFAP221, GADD45B, PTGFR, IRX2, PLCL1, SH3GL2, CAVIN1, SORBS1, SEMA3B, DNAI2, ARHGEF26, RADIL, GLIPR2, NKD1, SCN4B, RAI2, CHIA, PIP5K1B, RSPH9, SYNE1, RASIP1, TTN, SELENOP, ABCA6, TEX14, RAPGEF4, PECAM1, SLCO2A1, AKAP14, OTUD1, NTNG1, HEG1, MAB21L4, SPTBN1, RSPO2, ZBTB16, DPEP2, FBLN5, TPPP, SLC46A2, SASH1, PCDHGC3, LRRC32, CORO2B, TNS2, OLFML1, COL6A5, PALMD, CASKIN2, ADTRP, COL13A1, PDE5A, JAML, DPYSL2, NRN1, LMCD1, GYPC, PLCB4, CRTAC1, RANBP3L, P3H2, GUCY1A2, GPM6B, NDRG2, PTPRM, EDNRB, PGC, PRX, NEDD9, DENND2A, ESAM, PLEKHH2, LEPR, PDZRN4, LMO2, TMEM204, FBLN1, ODAM, MYH11, ADGRD1, THSD1, TMEM212, WASF3, MYRF, ATF3, MSRB3, ZNF366, VSIG4, FGD5, PTPRB, DLC1, TNS1, FGF10, HIF3A, C1QTNF7, RHOJ, CLEC1A, PPP1R15A, ATP13A4, CXCL2, KLF2, LAMC3, ANXA3, TIE1, SULT1C4, SUSD2, SELP, PPARG, CSRNP1, WFDC1, ITIH5, SFTPB, NOSTRIN, JAM2, SMTNL2, PKHD1L1, PID1, GRK5, KCNK3, PDZD2, DUSP1, LRRK2, LIMCH1, PCOLCE2, LDB2, GPRC5A, IL1RL1, FAM13C, SVEP1, AFF3, HLF, RP1, NCKAP5, ERICH3, DUOX1, EMP2, EPAS1, CCDC141, PPP1R14A, SLIT2, CLEC14A, MMRN1, PDK4, SLC39A8, EDN1, ADAMTS1, VSIG2, COX4I2, ABCA8, GRASP, ABCA3, MYCT1, ROBO2, CALCRL, ANXA8, ANKRD29, CDH5, LIMS2, TEKT1, ZNF385B, NECAB1, ROBO4, SLIT3, ADAMTSL3, PLA2G4F, VIPR1, LTBP4, GPC3, KLF4, C11orf88, CACNA2D2, CNTFR, VEPH1, ADAMTS8, PI16, FGFR4, RAMP3, RGCC, ABI3BP, HHIP, CA4, TGFBR3, CLIC5, RXFP1, CCL14, COL6A6, CYP4B1, SCARA5, TPPP3, ACKR1, AOC3, ACTN2, GRIA1, MFAP4, SCUBE1, STXBP6, DNASE1L3, GPM6A, CLEC3B, RTKN2, TNXB, LGI3, MAMDC2, LYVE1, BTNL9, FOSB, GKN2, FCN3, DES, FHL1, FAM107A, SFTPC