Table 2. Centralized Genome-Enabled Resources and Databases for T. pseudonana and P. tricornutum.

Resource	T. pseudonana	P. tricornutum
Genome portal (annotation version)	https://genome.jgi.doe.gov/Thaps3/Thaps3.home.html (v3)	https://genome.jgi.doe.gov/Phatr2/Phatr2.home.html (v2)
		http://protists.ensembl.org/Phaeodactylum_tricornutum/Info/Index (v3)
Plastid proteome prediction	ASAFinder: http://rocaplab.ocean.washington.edu/tools/asafind/	ASAFinder: http://rocaplab.ocean.washington.edu/tools/asafind/
	HECTAR: http://www.sb-roscoff.fr/hectar/	HECTAR: http://www.sb-roscoff.fr/hectar/
Transcriptomic database	http://networks.systemsbiology.net/diatom-portal/	http://protists.ensembl.org/Phaeodactylum_tricornutum/Info/Index
		http://networks.systemsbiology.net/diatom-portal/http://www.biologie.ens. fr/diatomics/EST3
Metabolic database/models		http://www.diatomcyc.org
		http://systemsbiology.ucsd.edu/sites/systemsbiology.ucsd.edu/files/ Attachments/Downloads/SuppData/SupplementalData setS1x.zip
DNA methylome database		http://protists.ensembl.org/Phaeodactylum_tricornutum/Info/Index
Histone marks database		http://protists.ensembl.org/Phaeodactylum_tricornutum/Info/Index
Small ncRNAs database		http://protists.ensembl.org/Phaeodactylum_tricornutum/Info/Index