. 2020 Mar 2;86(6):e02873-19. doi: 10.1128/AEM.02873-19

TABLE 2.

Clavibacter sp. genome sequences used for the comparative genomics and phylogenetic analyses^a

Previous name^b	New name^c	Strain	Host of isolation	Pathogenicity	Date	Country of Isolation	GenBank accession no.	Reference
Clavibacter sp.	New species IV	CFBP 8615^d	Solanum lycopersicum	NP^e	2015	Iran	QWGT01000000	20
Clavibacter sp.	new species IV	CFBP 8616^d	Solanum lycopersicum	NP	2015	Iran	QWGU01000000	20
C. michiganensis subsp. californiensis	New species II	CFBP 8216^T^d	Solanum lycopersicum	NP	2000	USA	QWEE01000000	20
C. michiganensis subsp. chilensis	New species III	CFBP 8217^T^d	Solanum lycopersicum	NP	2007	Netherlands	QWGS01000000	20
Clavibacter sp.	New species III	CFBP 7491^d	Solanum lycopersicum	NP	ND^f	ND	QWEB01000000	20
Clavibacter sp.	New species I	CFBP 7493^d	Solanum lycopersicum	NP	ND	ND	QWEC01000000	20
C. michiganensis subsp. insidiosus	C. insidiosus	CFBP 1195	Medicago sativa	Alfalfa	1964	UK	QWDZ01000000	20
C. michiganensis subsp. insidiosus	C. insidiosus	CFBP 6488	Medicago sativa	Alfalfa	1998	Czech Republic	QWEA01000000	20
C. michiganensis subsp. nebraskensis	C. nebraskensis	CFBP 7577	Zea mays	Corn	ND	ND	QWED01000000	20
C. michiganensis subsp. phaseoli	New species III	CFBP 8627^T	Phaseolus vulgaris	NP	2009	Spain	QWGV01000000	20
Clavibacter sp.	New species VIII	CASJ009^d	Solanum lycopersicum	NP	2011	USA	MDHJ00000000.1	22
Clavibacter sp.	New species V	CFBP 8019^d	Solanum lycopersicum	NP	2011	USA	NZ_MDJZ00000000.1	22
Clavibacter sp.	New species IX	CFBP 8017^d	Solanum lycopersicum	Wheat	2006	Netherlands	MDJY00000000	22
Clavibacter sp.	New species VI	CF11	soil	NP	2011	China	JROD00000000	23
Clavibacter sp.	New species I	LMG 26808^d	Solanum lycopersicum	NP	ND	Netherlands	AZQZ00000000	28
Clavibacter sp.	C. insidiosus	CFBP 7494^d	Solanum lycopersicum	Wheat	1999	Chile	MDJW00000000	22
Clavibacter sp.	New species VII	DOAB 609	Triticum aestivum	ND	1976	USA	LQXA00000000	50
C. michiganensis subsp. michiganensis	C. michiganensis	LMG 7333^T	Solanum lycopersicum	Tomato	1957	Hungary	NZ_MZMP00000000	51
C. michiganensis subsp. michiganensis	C. michiganensis	NCPPB 382	Solanum lycopersicum	Tomato	1956	UK	AM711867.1	26
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ004	Solanum lycopersicum	Tomato	1999	USA	MDHE00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CAYO001	Solanum lycopersicum	Tomato	2001	USA	MDHL00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ005	Solanum lycopersicum	Tomato	2001	USA	MDHF00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CA00001	Solanum lycopersicum	Tomato	2000	USA	MDHK00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ008	Solanum lycopersicum	Tomato	2002	USA	MDHI00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ006	Solanum lycopersicum	Tomato	2002	USA	MDHG00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ003	Solanum lycopersicum	Tomato	1999	USA	MDHD00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	VKM Ac-1403	Solanum lycopersicum	Tomato	2017	USA	FVZG00000000	52
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ002	Solanum lycopersicum	Tomato	1999	USA	MDHC00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CA00002	Solanum lycopersicum	Tomato	2000	USA	MDHM00000000	22
C. michiganensis subsp. michiganensis	C. michiganensis	CASJ007	Solanum lycopersicum	Tomato	2011	USA	MDHH00000000	22
C. michiganensis subsp. capsici	C. capsici	PF008^T	Capsicum sp.	Pepper	ND	South Korea	NZ_CP012573	15
C. michiganensis subsp. capsici	C. capsici	CFBP 7576^d	Solanum lycopersicum	Pepper	1997	ND	MDJX00000000	22
C. michiganensis subsp. insidiosus	C. insidiosus	LMG 3663^T	Medicago sativa	Alfalfa	1955	USA	MZMO00000000	51
C. michiganensis subsp. insidiosus	C. insidiosus	R1-1	Medicago truncatula	Alfalfa	2009	USA	NZ_CP011043	29
C. michiganensis subsp. nebraskensis	C. nebraskensis	NCPPB 2581^T	Zea mays	Corn	1971	USA	NC_020891.1	50
C. michiganensis subsp. nebraskensis	C. nebraskensis	DOAB 395	Zea mays	Corn	2014	Canada	LSOE00000000	50
C. michiganensis subsp. nebraskensis	C. nebraskensis	DOAB 397	Zea mays	Corn	2014	Canada	LAKL00000000	53
C. michiganensis subsp. sepedonicus	C. sepedonicus	ATCC 33113^T	Solanum tuberosum	Potato	ND	Canada	NC_010407.1	54
C. michiganensis subsp. sepedonicus	C. sepedonicus	CFIA-CsR14	Solanum tuberosum	Potato	ND	Canada	MZMN00000000	51
C. michiganensis subsp. sepedonicus	C. sepedonicus	CFIA-Cs3N	Solanum tuberosum	Potato	ND	Canada	MZMM00000000	51
C. michiganensis subsp. tessellarius	C. tessellarius	ATCC 33566^T	Triticum aestivum	Wheat	1978	USA	MZMQ01000000	51

The first 10 sequences were obtained in this study and announced previously (20), while the remaining ones were retrieved from the NCBI GenBank database.

The original nomenclature of the taxon.

Either revised taxonomy of the strains (17) or their new taxonomic status as proposed in this study. Although new names of six species (i.e., C. capsici, C. insidiosus, C. michiganensis, C. nebraskensis, C. sepedonicus, and C. tessellarius) were formally described previously (17), a formal taxonomic description is needed for the hypothetical new species I to IX, which are based on the ANI/dDDH values (Table 3) and comparative genomics (Table 4).

The strain was isolated from tomato plant but was nonpathogenic on the host of isolation.

NP, nonpathogenic.

ND, not determined.