TABLE 6.
Prophages within the genome sequences of Clavibacter sp. strains detected using the online service PHASTERa
| Taxon | Strain | Region length (kb) | Completeness | No. of proteins | Position (contig: bp) | Phage (GenBank accession no.) | G+C content (%) |
|---|---|---|---|---|---|---|---|
| Clavibacter sp. | CFBP 8615 | 6.9 | Incomplete | 8 | 38: 3643–10586 | Phi92 (NC_023693) | 71.28 |
| Clavibacter sp. | CFBP 7491 | 6.8 | Incomplete | 14 | 4: 13543–20391 | Gordon_Schwabeltier (NC_031255) | 66.29 |
| Clavibacter sp. | LMG 26808 | 9.9 | Incomplete | 10 | 13: 128032–137979 | Phi92 (NC_023693) | 71.79 |
| 7 | Incomplete | 11 | 15: 712–7762 | N15 (NC_001901) | 46.49 | ||
| 23.7 | Incomplete | 10 | 15: 5546–29310 | P1 (NC_005856) | 48.19 | ||
| Clavibacter sp. | CASJ009 | 7.7 | Incomplete | 9 | 1009722–1017492 | Phi92 (NC_023693) | 71.29 |
| C. insidiosus | LMG 3663T | 6.7 | Incomplete | 16 | scaffold2: 5055–11844 | Gordon_Smoothie (NC_030696) | 66.95 |
| C. sepedonicus | ATCC 33113T | 7.1 | Incomplete | 10 | 42745–49937 | Phi92 (NC_023693) | 70.71 |
| 7.7 | Incomplete | 8 | 660037–667813 | Phi92 (NC_023693) | 71.20 |
a
Five prophage groups, i.e., Gordon_Schwabeltier, Gordon_Smoothie, N15, P1, and Phi92, were detected in strains CFBP 8615, CFBP 7491, LMG 26808, CASJ009, LMG 3663, and ATCC 33113. No prophage was detected within the genome sequences of the strains ATCC 33566T, CF11, CFBP 7493, CFBP 7494, CFBP 8017, CFBP 8019, CFBP 8216T, CFBP 8217T, CFBP 8616, CFBP 8627T, DOAB 609, NCPPB 2581T, NCPPB 382, and PF008T.