TABLE 7.

In silico screening for bacteriocins and antibiotic peptides among the Clavibacter sp. genome sequences analyzed in this study^a

Taxon	Strain	Contig no.	Start codon	End codon	Class
C. michiganensis sensu stricto	NCPPB 382	1	2211104	2233501	63.1; Michiganin A (Lantibiotic)
C. capsici	PF008T	1	2406476	2426476	Sactipeptides
Clavibacter sp.	CFBP 8615	14	7079	27079	LAPs
		91	1570	18430	Sactipeptides
Clavibacter sp.	CFBP 8616	166	4888	15112	Sactipeptides
C. michiganensis subsp. californiensis	CFBP 8216T	201	9178	10822	Sactipeptides
Clavibacter sp.	CFBP 7491	224	8131	11869	Sactipeptides
Clavibacter sp.	CFBP 7493	1	25925	45925	Thiopeptide, LAPs
		226	-8455	11545	Sactipeptides
Clavibacter sp.	CFBP 7494	9	267758	287758	LAPs
		15	89075	109075	Sactipeptides
Clavibacter sp.	CFBP 8019	11	186443	206443	Sactipeptides
		17	190604	210604	LAPs
Clavibacter sp.	LMG 26808	6	43154	63154	Thiopeptide, LAPs
		10	130865	150865	Sactipeptides
Clavibacter sp.	CF11	17	47765	67765	Sactipeptides
		2	247508	267508	LAPs
		13	138056	158368	150.1, Enterocin_AS_48
Clavibacter sp.	DOAB 609	20	4781	24781	Sactipeptides
		30	31400	51400	LAPs
Clavibacter sp.	CFBP 8017	33	39236	59236	LAPs
		46	11546	31546	Sactipeptides
C. michiganensis subsp. phaseoli	CFBP 8627T	212	−9916	10084	Sactipeptides
C. michiganensis subsp. chilensis	CFBP 8217T	NDb	ND	ND	ND
Clavibacter sp.	CASJ009	ND	ND	ND	ND
C. insidiosus	LMG 3663T	1	2292719	2312719	Sactipeptides
C. nebraskensis	NCPPB 2581T	1	2422475	2442475	Sactipeptides
C. sepedonicus	ATCC 33113T	1	2663669	2683669	Sactipeptides
		1	3119744	3139861	294.1, Plantathiazolicin (Plantazolicin)
C. tessellarius	ATCC 33566T	1	1820699	1840699	Sactipeptides

^aThe lantibiotic Michiganin A was detected in all 12 C. michiganensis sensu stricto strains (Fig. 1) but was not found in nonpathogenic tomato-associated strains or in the pathogenic strains on other plant species.

^bND, not detected.