Table 4.
Summary of reads mapping to the reference genome.
| Samples | Total Reads | Mapped Reads | Uniq Mapped Reads | Multiple Mapped Reads | Reads Map to ‘+’ | Reads Map to ‘-’ |
|---|---|---|---|---|---|---|
| Cattle1 | 159,445,302 | 144,123,296 (90.39%) |
116,097,555 (72.81%) |
28,025,741 (17.58%) |
70,917,781 (44.48%) |
70,516,292 (44.23%) |
| Cattle2 | 182,448,004 | 164,895,797 (90.38%) |
131,073,274 (71.84%) |
33,822,523 (18.54%) |
80,640,303 (44.20%) |
80,556,898 (44.15%) |
| Cattle3 | 177,076,476 | 158,593,439 (89.56%) |
125,617,731 (70.94%) |
32,975,708 (18.62%) |
77,438,780 (43.73%) |
76,997,388 (43.48%) |
| Buffalo1 | 212,213,766 | 155,061,510 (73.07%) |
137,479,465 (64.78%) |
17,582,045 (8.29%) |
77,107,211 (36.33%) |
77,486,901 (36.51%) |
| Buffalo2 | 190,931,794 | 139,035,249 (72.82%) |
124,008,574 (64.95%) |
15,026,675 (7.87%) |
69,092,223 (36.19%) |
69,540,702 (36.42%) |
| Buffalo3 | 136,416,330 | 95,407,829 (69.94%) |
83,824,709 (61.45%) |
11,583,120 (8.49%) |
47,254,024 (34.64%) |
47,493,449 (34.82%) |