Table 2. Annotation of subcellular localization of proteins in the total protein fractions derived from Arabidopsis siliques, seeds, and seedlings.
All proteins were annotated with 78 subcellular localizations obtained from the Plant Proteome Database and combined into 11 groups. The riBAQ intensities (in per mille) of the proteins were added up for 11 different subcellular compartments.
| Localization | Phase I Siliques | Phase II Siliques | Rehydrated Seeds | Stratified Seeds | 24 h Seedlings | 36 h Seedlings | 48 h Seedlings | 60 h Seedlings |
|---|---|---|---|---|---|---|---|---|
| Plastid | 571.3 | 392.3 | 44.1 | 40.0 | 52.4 | 154.0 | 334.3 | 477.5 |
| ER | 8.0 | 5.1 | 2.2 | 2.6 | 8.8 | 13.2 | 13.1 | 15.9 |
| Vacuole | 14.8 | 16.1 | 4.8 | 5.5 | 7.1 | 9.9 | 12.1 | 23.6 |
| Peroxisome | 15.1 | 9.8 | 9.6 | 10.0 | 22.7 | 26.6 | 26.4 | 21.2 |
| Golgi apparatus | 0.3 | 0.2 | 0.5 | 0.6 | 1.1 | 1.4 | 0.7 | 0.5 |
| Mitochondrion | 22.8 | 13.5 | 9.0 | 10.7 | 32.0 | 39.5 | 33.9 | 34.5 |
| Nucleus | 29.1 | 18.7 | 17.3 | 19.3 | 29.2 | 34.3 | 35.8 | 26.8 |
| Cytoplasm | 67.8 | 28.3 | 40.3 | 48.3 | 148.1 | 195.7 | 205.9 | 183.5 |
| Plastoglobule | 12.3 | 14.1 | 0.8 | 0.8 | 0.9 | 2.0 | 5.1 | 6.4 |
| Plasma membrane | 15.4 | 9.1 | 2.5 | 3.0 | 6.3 | 8.9 | 9.3 | 9.2 |
| LD | 9.1 | 25.3 | 57.4 | 69.8 | 37.9 | 18.8 | 8.3 | 4.8 |