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. 2020 Jan;151(1):93–103. doi: 10.4103/ijmr.IJMR_220_18

Supplementary Table II.

Top 10 phyla, class, order and genera of Greengenes, SILVA, RDP and 16S-UDb databases (clustered at 97% threshold)

 Rank  Taxon Greengenes SILVA RDP 16S-UDb
Phylum Proteobacteria 27.69 31.01 29.22 38.24
Firmicutes 26.84 29.41 27.03 29.91
Actinobacteria 5.60 8.37 6.60 12.72
Bacteroidetes 13.05 11.34 12.80 10.44
Cyanobacteria 2.13 2.09 1.76 1.93
Tenericutes 0.74 0.57 0.26 1.39
Spirochaetes 1.45 1.08 1.03 0.83
Verrucomicrobia 1.76 1.09 1.61 0.47
Deinococcus-Thermus N/A 0.19 0.22 0.45
Planctomycetes 3.42 2.59 2.40 0.38
Class Gammaproteobacteria 9.11 11.35 10.19 21.20
Bacilli 4.55 6.48 5.43 17.57
Actinobacteria 3.73 6.54 6.53 12.59
Clostridia 21.73 21.48 19.23 11.16
Alphaproteobacteria 7.69 8.62 7.84 9.26
Betaproteobacteria 4.04 5.39 4.49 4.56
Bacteroidia 7.31 5.28 5.55 3.83
Flavobacteriia 2.23 2.24 2.24 3.56
Deltaproteobacteria 5.59 4.50 4.78 1.85
Sphingobacteriia 0.57 1.99 2.27 1.58
Order Bacillales 2.87 3.65 3.51 12.70
Actinomycetales 3.59 0.17 4.43 11.90
Clostridiales 20.98 21.10 18.77 10.32
Pseudomonadales 1.08 1.94 1.48 5.28
Enterobacteriales 0.94 2.32 1.36 4.98
Lactobacillales 1.60 2.80 1.86 4.79
Bacteroidales 7.31 5.14 5.55 3.82
Flavobacteriales 2.22 2.24 2.24 3.56
Unclassified 8.96 6.53 23.69 3.46
Burkholderiales 1.99 3.11 2.39 2.97
Family Enterobacteriaceae 0.94 2.32 1.36 4.97
Bacillaceae 1.27 1.75 1.23 4.68
Flavobacteriaceae 1.48 1.86 179 3.43
Pseudomonadaceae 0.62 1.24 0.97 3.36
Lachnospiraceae 5.78 11.06 7.47 3.30
Ruminococcaceae 1.27 5.36 5.55 2.58
Rhodobacteraceae 1.35 1.78 1.49 2.34
Lactobacillaceae 0.48 0.74 0.50 2.10
Streptomycetaceae 0.33 0.69 0.41 2.00
Moraxellaceae 0.46 0.69 0.50 1.90
Genus Bacillus 0.74 1.28 1.23 5.55
Pseudomonas 0.49 1.20 0.70 3.27
Ruminococcus 0.67 0.36 0.30 2.52
Lactobacillus 0.46 0.72 0.46 1.92
Prevotella 1.07 0.42 0.98 1.91
Streptomyces 0.26 0.64 0.46 1.87
Faecalibacterium 0.28 0.49 0.54 1.83
Paenibacillus 0.38 0.47 0.32 1.51
Clostridium 0.80 0.44 0.34 1.43
Acinetobacter 0.24 0.46 0.23 1.30