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. 2020 Mar 4;15(3):e0228485. doi: 10.1371/journal.pone.0228485

Table 1. Trichoderma species identified from garlic and onion crop soils in Brazil and Genbank accession numbers of their partial actin, calmodulin, rpb2, tef1-α and ITS sequences used in phylogenetic analysis.

Species Strain Collection location Crop act cal rpb2 tef1-α ITS
T. koningiopsis CEN1386 Curitibanos, SC Garlic MK696725 MK696671 MK696779 MK696617 MK714859
T. peberdyi CEN1387 Curitibanos, SC Garlic MK696727 MK696673 MK696781 MK696619 MK714861
T. peberdyi CEN1388 Curitibanos, SC Garlic MK696728 MK696674 MK696782 MK696620 MK714862
T. peberdyi CEN1389 Curitibanos, SC Garlic MK696729 MK696675 MK696783 MK696621 MK714863
T. peberdyi CEN1390 Curitibanos, SC Garlic MK696730 MK696676 MK696784 MK696622 MK714864
T. peberdyi CEN1391 Rio Paranaíba, MG Garlic MK696731 MK696677 MK696785 MK696623 MK714865
T. peberdyi CEN1392 Rio Paranaíba, MG Garlic MK696732 MK696678 MK696786 MK696624 MK714866
T. peberdyi CEN1393 Rio Paranaíba, MG Garlic MK696734 MK696680 MK696788 MK696626 MK714868
T. hamatum CEN1394 Rio Paranaíba, MG Garlic MK696735 MK696681 MK696789 MK696627 MK714869
T. hamatum CEN1395 Rio Paranaíba, MG Garlic MK696736 MK696682 MK696790 MK696628 MK714870
T. asperelloides CEN1396 Rio Paranaíba, MG Garlic MK696737 MK696683 MK696791 MK696629 MK714871
T. asperelloides CEN1397 Rio Paranaíba, MG Garlic MK696738 MK696684 MK696792 MK696630 MK714872
T. peberdyi CEN1398 Bueno Brandão, MG Garlic MK696740 MK696686 MK696794 MK696632 MK714874
T. longibrachiatum CEN1399 São Marcos, RS Garlic MK696741 MK696687 MK696795 MK696633 MK714875
T. longibrachiatum CEN1400 São Marcos, RS Garlic MK696742 MK696688 MK696796 MK696634 MK714876
T. longibrachiatum CEN1401 São Marcos, RS Garlic MK696744 MK696690 MK696798 MK696636 MK714878
T. longibrachiatum CEN1402 São Marcos, RS Garlic MK696745 MK696691 MK696799 MK696637 MK714879
T. azevedoi CEN1403 São Marcos, RS Garlic MK696746 MK696692 MK696800 MK696638 MK714880
T. longibrachiatum CEN1404 São Marcos, RS Garlic MK696747 MK696693 MK696801 MK696639 MK714881
T. koningiopsis CEN1405 São Marcos, RS Garlic MK696749 MK696695 MK696803 MK696641 MK714883
T. koningiopsis CEN1406 São Marcos, RS Garlic MK696750 MK696696 MK696804 MK696642 MK714884
T. koningiopsis CEN1407 São Marcos, RS Garlic MK696751 MK696697 MK696805 MK696643 MK714885
T. asperelloides CEN1408 Monte Alto, SP Onion MK696753 MK696699 MK696807 MK696645 MK714887
T. asperelloides CEN1409 Monte Alto, SP Onion MK696755 MK696701 MK696808 MK696647 MK714889
T. afroharzianum CEN1410 Monte Alto, SP Onion MK696756 MK696702 MK696809 MK696648 MK714890
T. asperelloides CEN1411 Monte Alto, SP Onion MK696757 MK696703 MK696810 MK696649 MK714891
T. lentiforme CEN1412 Monte Alto, SP Onion MK696758 MK696704 MK696811 MK696650 MK714892
T. asperelloides CEN1413 Monte Alto, SP Onion MK696759 MK696705 MK696812 MK696651 MK714893
T. afroharzianum CEN1414 Monte Alto, SP Onion MK696760 MK696706 MK696813 MK696652 MK714894
T. lentiforme CEN1415 São José do Rio Pardo, SP Onion MK696761 MK696707 MK696814 MK696653 MK714895
T. lentiforme CEN1416 São José do Rio Pardo, SP Onion MK696762 MK696708 MK696815 MK696654 MK714896
T. afroharzianum CEN1417 São José do Rio Pardo, SP Onion MK696763 MK696709 MK696816 MK696655 MK714897
T. asperelloides CEN1418 São José do Rio Pardo, SP Onion MK696764 MK696710 MK696817 MK696656 MK714898
T. asperelloides CEN1419 São José do Rio Pardo, SP Onion MK696765 MK696711 MK696818 MK696657 MK714899
T. erinaceum CEN1420 São José do Rio Pardo, SP Onion MK696766 MK696712 MK696819 MK696658 MK714900
T. erinaceum CEN1421 São José do Rio Pardo, SP Onion MK696767 MK696713 MK696820 MK696659 MK714901
T. azevedoi CEN1422 Rio Paranaíba, MG Onion MK696768 MK696714 MK696821 MK696660 MK714902
T. azevedoi CEN1423 Rio Paranaíba, MG Onion MK696769 MK696715 MK696822 MK696661 MK714903
T. asperelloides CEN1424 Rio Paranaíba, MG Onion MK696770 MK696716 MK696823 MK696662 MK714904
T. peberdyi CEN1425 Rio Paranaíba, MG Onion MK696771 MK696717 MK696824 MK696663 MK714905
T. peberdyi CEN1426 Itobi, SP Onion MK696772 MK696718 MK696825 MK696664 MK714906
T. asperelloides CEN1427 Itobi, SP Onion MK696773 MK696719 MK696826 MK696665 MK714907
T. lentiforme CEN1428 Itobi, SP Onion MK696775 MK696721 MK696827 MK696667 MK714909
T. lentiforme CEN1429 São José do Rio Pardo, SP Onion MK696776 MK696722 MK696828 MK696668 MK714910
T. asperelloides CEN1430 São José do Rio Pardo, SP Onion MK696777 MK696723 MK696829 MK696669 MK714911
T. asperelloides CEN1431 Sacramento, MG Onion MK696778 MK696724 MK696830 MK696670 MK714912
T. peberdyi CEN1457 Curitibanos, SC Garlic MK696726 MK696672 MK696780 MK696618 MK714860
T. peberdyi CEN1458 Curitibanos, SC Garlic MK696733 MK696679 MK696787 MK696625 MK714867
T. asperelloides CEN1459 Bueno Brandão, MG Garlic MK696739 MK696685 MK696793 MK696631 MK714873
T. longibrachiatum CEN1460 São Marcos, RS Garlic MK696743 MK696689 MK696797 MK696635 MK714877
T. longibrachiatum CEN1461 São Marcos, RS Garlic MK696748 MK696694 MK696802 MK696640 MK714882
T. longibrachiatum CEN1462 São Marcos, RS Garlic MK696752 MK696698 MK696806 MK696644 MK714886
T. asperellum CEN1463 Monte Alto, SP Onion MK696754 MK696700 - MK696646 MK714888
T. asperellum CEN1464 Itobi, SP Onion MK696774 MK696720 - MK696666 MK714908