Table 2.

Evaluation of nucleotide variations located in untranslated region (5’-UTR; 3’-UTR) and synonymous single-nucleotide polymorphisms (SNPs) in the translated (t) region on immune-related genes expressed in Salmo salar.

Bold and underlined letter represents the nucleotide variation (transcription factor binding site, and alternative splicing regulatory motif). The arrow behind the sequence on the predicted transcription factor binding site column shows the 5’– > 3’ sense and the motif composition. On the alternative splicing regulatory motif column, normal and italic styles indicate the presence of predicted exon splicing enhancer (ESE) or silencer (ESS), respectively. The FASTSNP score was assigned to each SNP (0: minimum score risk; 5: maximum score risk). NF, not found. ND, not determined.