Table 3.
Evaluation of relative synonymous codon usage (RSCU) in immune-relevant genes in Salmo salar.
| Nucleotide accession number | Gene | Gene acronym | sSNP | Amino acid | Codon change | RSCU | ΔRSCU | ||
|---|---|---|---|---|---|---|---|---|---|
| From | To | From | To | ||||||
| NM_001165324.1 | cd18 | cd18 | c.2275G>A | T | ACG | ACA | 0.48 | 1.00 | 0.52 |
| NM_001141472.1 | glutathione transferase omega-1 | gsto-1 | c.558G>A | A | GCG | GCA | 0.44 | 0.84 | 0.40 |
| BT046112.1 | heat shock 70 kDa protein | hsp70 | c.1950C>T | P | CCG | CCT | 1.52 | 1.04 | -0.48 |
Bold letter represents the nucleotide variations in codon for each synonymous single-nucleotide polymorphism (sSNP). RSCU and ΔRSCU values were calculated (ΔRSCU = RSCU mutant - RSCU wild type).