Table 5.
Accuracy of genomic prediction using the markers preselected by genome-wide association studies (GWAS) method with different cutoff values.
| Cutoff Value1 |
Seq-BW2 | Chip-BW | Seq-FCR | Chip-FCR |
|---|---|---|---|---|
| 1 | 0.509 | 0.516 | 0.247 | 0.231 |
| 0.1 | 0.566 | 0.561 | 0.357 | 0.419 |
| 0.01 | 0.573 | 0.596 | 0.345 | 0.449 |
| 0.001 | 0.487 | 0.545 | 0.249 | 0.395 |
1Cutoff value of 1 indicates the scenario of using all single nucleotide polymorphism (SNP) markers without preselection.
2BW, body weight at the 12th week, FCR, feed conversion ratio; Seq, High-throughput sequencing markers; Chip, Chip markers.