Figure 3.

Expected relative pairwise diversity following a selective sweep. Plots of $\mathrm{E}\left({\pi }_{SV}/{\pi }_0\right)$ as a function of the recombination rate scaled to population size $2Nr$. Lines are analytical solutions (Equation 9), points are forward-in-time simulation results. $N=5,000$, $s=0.05$, $4N\mu =40$ (note μ is scaled by N, not $N_e$), and dominance coefficient $h=0.1$ (red lines, points), 0.5 (black lines, points), or 0.9 (blue lines, points). Values of $p_0$ and self-fertilization rates σ used are shown for the relevant row and column; note the $x-$axis range changes with the self-fertilization rate. For $p_0=1/2N$ we use $p_{0,A}$ in our model, as given by Equation 8. Further results are plotted in Section C of Supplementary File S1.