WGS |
Whole genome |
~€1,500 per sample |
Mutations (coding and non-coding), indels, aneuploidies, CNAs, structural rearrangements, signatures |
Thousands |
Comprehensive genomic characterization |
Cost, analysis, storage of data, low depth |
WES |
Coding genome (2%) |
~€500 per sample |
Mutations (coding), indels, aneuploidies, CNAs |
Hundreds |
Lower cost, carries most of clinically useful information, easier analysis |
No information on non-coding genome |
Targeted |
Custom number of genes/regions |
Variable |
Mutations (coding), indels, aneuploidies, CNAs |
Variable |
Customizable, lowest cost and complexity of analysis, limited storage required |
Not useful for discovery approaches |
FISH |
Custom number of regions |
~€100 per probe |
Deletions, gains, translocations |
None |
Familiar to most laboratories, short turnaround time |
No mutations detected, ideal for a low number of probes |