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—Core genome neighbor-joining phylogeny of 92 reference Neisseria genomes from PubMLST database annotated with Neisseria spp., presence of the Nf1 prophage (black dot), and restriction modification systems (gray boxes). Neisseria spp. are color coded (outer ring) as orange, Neisseria meningitidis; green, Neisseria gonorrhoeae; blue, Neisseria lactamica; and black, other Neisseria spp. Neisseria meningitidis clonal complexes (cc) are highlighted in lavender and pink.
