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. 2020 Mar 5;16(3):e9401. doi: 10.15252/msb.20199401

Table 1.

Parameterization of gates

Response functiona Promoter interferencea Kineticsa
y min y max K n Non‐specific (α) Roadblocking (β)b Induction (τyON) Relaxation (τyOFF)
F1‐AmeR_2 0.29 4.6 0.12 1.5 0.09 1.00 8.00 2.30
F2‐AmeR_2 0.21 3.7 0.04 1.3 0.10 1.00 8.00 2.50
N1‐LmrA_2 0.077 1.3 0.09 1.8 0.28 1.00 1.00 1.30
A1‐AmtR_2 0.035 3.1 0.05 1.7 0.27 1.00 0.90 2.50
H1‐HlyIIR_2 0.004 2.1 0.13 2.6 0.15 1.00 0.45 4.00
P1‐PhlF 0.004 6.9 0.04 3.8 0.22 0.06 0.30 4.00
P2‐PhlF 0.007 7.5 0.21 4.5 0.15 0.12 0.20 4.00
P3‐PhlF 0.004 7.1 0.12 3.3 0.24 0.06 0.15 5.00
S1‐SrpR 0.001 1.4 0.02 3.1 0.50 0.05 5.00 7.00
S2‐SrpR 0.003 3.2 0.06 2.7 0.35 0.09 0.50 7.00
S3‐SrpR 0.004 3.1 0.09 2.7 0.33 0.10 0.70 6.00
S4‐SrpR 0.004 3.2 0.11 2.7 0.38 0.09 1.80 8.00
E1‐BetI_2 0.041 2.8 0.28 2.9 0.64 0.46 0.40 1.50
B1‐BM3R1 0.004 0.6 0.06 2.9 0.64 0.05 0.90 1.10
B2‐BM3R1 0.006 0.5 0.57 3.8 0.71 0.05 0.90 1.10
B3‐BM3R1 0.005 0.6 0.21 3.1 0.74 0.05 0.50 2.00
C1‐CymR 0.010 3.0 0.10 3.7 0.10 0.07 0.50 2.50
V1‐VanR 0.043 6.2 0.05 2.9 0.12 0.32 0.40 11.0
a

The maximum allowed value is one during fitting.

b

The units of y min and y max are RPU. The units of K are RPU. The timescales are in units of 1/h. n, α, and β are unitless.