Table 3:
Repeat sequences in the loquat genome
| Type | No. | Length | Rate (%) |
|---|---|---|---|
| Class I | 457,393 | 369,440,909 | 48.60 |
| Class I/DIRS | 11,457 | 9,761,251 | 1.28 |
| Class I/LINE | 26,529 | 8,851,756 | 1.16 |
| Class I/LTR | 36,969 | 15,617,403 | 2.05 |
| Class I/LTR/Copia | 141,908 | 120,380,193 | 15.84 |
| Class I/LTR/Gypsy | 183,863 | 199,727,884 | 26.28 |
| Class I/PLE|LARD | 54,589 | 14,439,960 | 1.90 |
| Clas I/SINE | 812 | 155,412 | 0.02 |
| Class I/SINE|TRIM | 7 | 3,188 | 0 |
| Class I/TRIM | 1,223 | 497,670 | 0.07 |
| ClassI/Unknown | 36 | 6,192 | 0 |
| Class II | 210,159 | 73,341,918 | 9.65 |
| Class II/Crypton | 7 | 403 | 0 |
| Class II/Helitron | 45,852 | 14,912,320 | 1.96 |
| Class II/MITE | 561 | 159,816 | 0.02 |
| ClassII/Maverick | 405 | 107,504 | 0.01 |
| Class II/TIR | 140,384 | 52,101,491 | 6.85 |
| Class II/Unknown | 22,950 | 6,060,384 | 0.80 |
| Potential host gene | 2,021 | 451,961 | 0.06 |
| SSR | 346 | 66,302 | 0.01 |
| Unknown | 26,488 | 6,427,210 | 0.85 |
| Total | 669,919 | 449,728,153 | 59.17 |
DIRS: Dictyostelium intermediate repeat sequence; LARD: large retrotransposon derivative; LINE: long interspersed nuclear element; LTR: long terminal repeat; MITE: miniature inverted-repeat transposable element; PLE: Penelope-like element; SINE: short interspersed nuclear element; SSR: simple sequence repeat; TIR: terminal inverted repeat; TRIM: terminal-repeat retrotransposons in miniature.