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. 2020 Mar 5;21:97. doi: 10.1186/s12859-020-3421-1

Table 1.

The recommended tool for different requirements

Requirements Recommendation
Accuracy first CNV size is small(< 100 kb) CNVkit
CNV size is large cn.MOPS
More insertion CoNIFER
More deletion CNVkit
No prior knowledge cn.MOPS+CoNIFER
Others Speed first cn.MOPS
Low- memory CoNIFER