Table 2.
Differential expression of hormonal biosynthesis and signaling genes in stem and leaf between sdm2 and FH1
| Gene ID | Nr Annotation | Gene name | Relative expression level (sdm2/FH1) | Expression trend (stem/leaf) | |||
|---|---|---|---|---|---|---|---|
| log2(stem) | Q-value (stem) | log2(leaf) | Q-value (leaf) | ||||
| Arahy.MA1Z2D | cytochrome P450 90B1 | DWF4 | −9.35 | 2.43E-59 | −3.99 | 1.29E-06 | down/down |
| Arahy.66GL51 | cytochrome P450 90A1 isoform X1 | CPD | −1.31 | 9.68E-13 | – | – | down/− |
| Arahy.7AH9CA | 3-epi-6-deoxocathasterone 23-monooxygenase | CYP90C1/D1 | −2.40 | 2.29E-13 | −1.59 | 2.47E-12 | down/down |
| Arahy.31R89H | cytochrome P450 85A-like | Dwarf/BR6ox | 1.99 | 1.08E-07 | – | – | up/− |
| Arahy.JZF5VE | cytochrome P450 85A-like | Dwarf/BR6ox | 2.50 | 9.71E-13 | – | – | up/− |
| Arahy.27TAQT | cytochrome P450 85A | Dwarf/BR6ox | – | – | 2.16 | 4.98E-31 | −/up |
| Arahy.2F8F1S | cytochrome P450 85A | Dwarf/BR6ox | – | – | 1.34 | 2.56E-35 | −/up |
| Arahy.TI8LFW | cytochrome P450 71A1 | CYP71A | −1.81 | 0.00E+ 00 | −2.06 | 2.09E-53 | down/down |
| Arahy.ZW245F | cytochrome P450 71A1-like | CYP71A | −1.63 | 3.04E-32 | – | – | down/− |
| Arahy.U2CXJI | cytochrome P450 734A1 | BAS1 | – | – | 1.80 | 0.00E+ 00 | −/up |
| Arahy.GJFA3Z | probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 | BRI1 | −2.38 | 3.16E-51 | – | – | down/− |
| Arahy.56X5WL | probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 | BRI1 | −1.32 | 1.91E-44 | – | – | down/− |
| Arahy.BMJ2CS | probable leucine-rich repeat receptor-like protein kinase At1g35710 | BRI1 | – | – | −2.59 | 6.71E-07 | −/down |
| Arahy.69MPHZ | probable leucine-rich repeat receptor-like protein kinase At5g49770 | BRI1 | – | – | −2.49 | 7.76E-19 | −/down |
| Arahy.DH99G0 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 | BAK1 | −1.99 | 4.09E-07 | −2.08 | 2.39E-74 | down/down |
| Arahy.SPI7HB | BES1/BZR1 homolog protein 2 | BES1/BZR1 | −8.42 | 0.00E+ 00 | −7.30 | 0.00E+ 00 | down/down |
| Arahy.RCTC3C | BES1/BZR1 homolog protein 2 | BES1/BZR1 | −1.92 | 7.59E-08 | −1.20 | 1.08E-04 | down/down |
| Arahy.ND2ZET | BES1/BZR1 homolog protein 2 | BES1/BZR1 | −1.94 | 4.11E-05 | – | – | down/− |
| Arahy.22IVZ0 | gibberellin 20 oxidase 1-D | GA20ox | 5.77 | 3.55E-98 | – | – | up/− |
| Arahy.B5269G | gibberellin 20 oxidase 1-like | GA20ox | 1.64 | 8.35E-05 | – | – | up/− |
| Arahy.BLJ7SD | gibberellin 20 oxidase 2 | GA20ox | 5.60 | 4.62E-85 | – | – | up/− |
| Arahy.YI9B6B | probable 2-oxoglutarate-dependent dioxygenase At5g05600 isoform X1 | 2-oxoglutarate-dependent dioxygenase | 1.39 | 2.07E-06 | 1.23 | 1.02E-04 | up/up |
| Arahy.XPP88F | 2-oxoglutarate-dependent dioxygenase AOP3 | 2-oxoglutarate-dependent dioxygenase | 1.08 | 9.86E-04 | −1.90 | 4.14E-23 | up/down |
| Arahy.MT91AM | 2-oxoglutarate-dependent dioxygenase AOP3 | 2-oxoglutarate-dependent dioxygenase | 1.74 | 4.26E-07 | – | – | up/− |
| Arahy.K8MVYG | gibberellin 3-beta-dioxygenase 1 | GA3ox | −1.41 | 1.18E-49 | – | – | down/− |
| Arahy.QH4I6C | gibberellin 2-beta-dioxygenase 1 isoform X1 | GA2ox | −1.87 | 2.50E-04 | −1.82 | 1.12E-11 | down/down |
| Arahy.VR90R2 | gibberellin 2-beta-dioxygenase 8 | GA2ox | 2.74 | 1.25E-17 | – | – | up/− |
| Arahy.EPT56A | gibberellin-regulated protein 11 | GRP11 | −1.84 | 1.80E-09 | – | – | down/− |
| Arahy.F1TUFL | gibberellin-regulated protein 4 | GRP4 | −1.63 | 0.00E+ 00 | – | – | down/− |
| Arahy.FJ610L | gibberellin-regulated protein 4 | GRP4 | – | – | 4.31 | 1.92E-70 | −/up |
| Arahy.X9WA5F | PREDICTED: gibberellin-regulated protein 4 | GRP4 | −1.20 | 8.62E-115 | 3.90 | 3.18E-37 | down/up |
| Arahy.VJ6NUA | gibberellin-regulated protein 6 isoform X2 | GRP6 | −1.44 | 1.83E-145 | 3.75 | 5.91E-89 | down/up |
| Arahy.UA0Z8F | auxin transporter-like protein 1 | AUX1/LAX family | 6.46 | 2.83E-11 | 4.70 | 1.25E-15 | up/up |
| Arahy.JN7ZD3 | auxin transporter-like protein 1 | AUX1/LAX family | 3.59 | 1.64E-04 | – | – | up/− |
| Arahy.LRNE2N | auxin transporter-like protein 3 | AUX1/LAX family | – | – | 2.06 | 4.38E-72 | −/up |
| Arahy.953E9B | auxin efflux carrier component 5 isoform X1 | PIN family | – | – | −3.06 | 3.04E-06 | −/down |
| Arahy.K2GLG1 | auxin efflux carrier component 5 isoform X1 | PIN family | – | – | −1.36 | 2.22E-09 | −/down |
| Arahy.BB2RVD | ABC transporter B family member 19-like | ABCB subfamily | 3.17 | 1.24E-04 | 1.27 | 3.06E-04 | up/up |
| Arahy.RLV4PD | ABC transporter B family member 1 | ABCB subfamily | – | – | 3.48 | 2.67E-09 | −/up |
| Arahy.M63M99 | ABC transporter B family member 11 | ABCB subfamily | – | – | −1.27 | 2.65E-33 | −/down |
| Arahy.YCYQ9Q | uncharacterized protein LOC107461514 | ABCB subfamily | −5.97 | 7.24E-43 | −7.49 | 2.35E-72 | down/down |
| Arahy.M4RITN | uncharacterized protein LOC107461514 | ABCB subfamily | −5.13 | 2.19E-18 | −3.56 | 5.47E-04 | down/down |
| Arahy.8QDS1I | auxin-induced protein AUX22-like | Aux/IAA protein | −2.12 | 5.87E-54 | 1.18 | 2.98E-30 | down/up |
| Arahy.KRC5M1 | auxin-induced protein AUX22 | Aux/IAA protein | −1.52 | 3.07E-35 | 1.34 | 3.65E-35 | down/up |
| Arahy.2A4XC9 | LOW QUALITY PROTEIN: auxin-responsive protein IAA29 | Aux/IAA protein | 1.69 | 9.56E-15 | 1.79 | 1.13E-09 | up/up |
| Arahy.S4Y3WA | auxin response factor 5 isoform X2 | ARF | 2.95 | 2.80E-24 | 2.97 | 1.67E-04 | up/up |
| Arahy.1B1I67 | putative auxin response factor 23 | ARF | 2.15 | 4.14E-10 | – | – | up/− |
| Arahy.X5Q10C | auxin response factor 18-like isoform X2 | ARF | – | – | 5.44 | 5.42E-06 | −/up |
| Arahy.MJW2EP | auxin-induced protein 15A-like | SAUR family | 1.86 | 2.74E-04 | 6.59 | 5.68E-12 | up/up |
| Arahy.E8WPL7 | auxin-induced protein 6B-like | SAUR family | 1.26 | 4.39E-05 | 2.93 | 2.63E-08 | up/up |
| Arahy.W3E9BL | auxin-responsive protein SAUR50-like | SAUR family | −1.11 | 3.81E-13 | 3.98 | 1.86E-07 | down/up |
| Arahy.NWIK25 | indole-3-acetic acid-induced protein ARG7-like | SAUR family | – | – | 4.77 | 2.09E-07 | −/up |
| Arahy.G43XWA | protein SHORT INTERNODES-like | SHI | −6.32 | 1.91E-10 | −6.63 | 3.98E-12 | down/down |
| Arahy.F7N9UG | protein SHI RELATED SEQUENCE 3-like | SRS | 5.43 | 6.62E-06 | – | – | up/− |
| Arahy.R0GFR4 | protein SHI RELATED SEQUENCE 3-like | SRS | – | – | −6.63 | 3.98E-12 | −/down |
| Arahy.EXJ5K8 | probable WRKY transcription factor 30 | WRKY30 | −1.20 | 7.10E-23 | −3.09 | 1.42E-76 | down/down |
| Arahy.TC7Y0P | probable WRKY transcription factor 46 | WRKY46 | −1.39 | 5.50E-62 | −1.96 | 1.75E-96 | down/down |
| Arahy.I9PJJN | probable WRKY transcription factor 70 | WRKY70 | −2.64 | 4.37E-05 | −1.65 | 1.84E-26 | down/down |
| Arahy.2031JR | transcription factor PRE6 | PRE6 | −2.41 | 5.06E-28 | 2.91 | 6.65E-10 | down/up |
| Arahy.577H6Y | transcription factor PRE6 | PRE6 | −1.93 | 2.80E-07 | 6.24 | 4.25E-36 | down/up |
| Arahy.HR6FN8 | transcription factor PRE6 | PRE6 | −2.67 | 7.25E-71 | down/− | ||
| Arahy.YX8FPP | transcription factor PRE6-like | PRE6 | −2.33 | 5.39E-05 | down/− | ||
| Arahy.WVIE7L | transcription factor PRE6 | PRE6 | – | – | 7.87 | 2.15E-50 | −/up |